RNA id: XM_043237940.1


Basic Information

Item Value
RNA id XM_043237940.1
length 3581
RNA type mRNA
GC content 0.46
exon number 17
gene id cracr2ab
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5216459 ~ 5224944 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGACAGGTTTGCACACTGATGCCATCAGCAGTGGCTTTGCAGATGTGCTCTGACAAATTTATGACCACTTTATCCATGTAATTGATTAAATTGATGTAAACACAGCCTAAGGAAGGCTGGGACCCAGTGCTGGGTTTCAAGTACAAGACAACAATGGATTTCATCTACTAGGTTGTTTTAAGAGAAATCATCGAACTGGACCTAGCTTTGAAGTCCGTCCCGTTCGTGCCACCACTGGCGGTCGAGGCTGTTAACCTGGGGTCATGTCAGAGACTGGACGGCTCTTCAGCAGTGGCTCGGACCAAGATGACAAGCAACCGCTGCCAAGGAACAGTGTGAATAAAGAGACAGGATGGGGACACGCTGCTGCGCTGGACAAAACAGAGGACTTTTTCCAGATCTGTGACAGCGAGGGAAAAGGATTCATCACACGTACAGATATGAGGAAGCTGCACAATGAGTTGCCACTCACTACTGAGGAACTGGAGAATGTCTTCGACTCACTAGATCTTGACGAAAATGGATACCTGACTCTAGGAGAGTTTTCCTCTGGATTTAGTAATTTTCTTCAGGGACGGAGAGCCTCTGCCACGGAGGAGCTGATGACTACACCCTCGCATAAAGATCGAGAGGCTCCCGGTCGGAGTTCAGGGGATAAAGAGCAGTCAGAGAACGAGGACGATGAAGAGACGCATTTCAGCATGTTGATGGAGAGCTTGGGTGCCAGTAATGTGTTTGAAGAGCCGAGTGAGGTTCGCAGCCTGTGGGCTCAGCTCAGGAAAGACGAGCCTCACCTCTTGTCCAACTTTGAAGAATTTCTTGCCCGTGTCACGCATCAAATCAAAGAGGCTCGACAAGAGAGGAAAGAGATGGAGAGCGCCCTCAGGAGGAAAGCAGTCACACATGACACTGAAATATGCAGATTATATGAAGAAATGGAGCAACAgattattaatgaaaaagaCAGAACATTTGTGAAGGACTCCAAAACTCTGCAGTCACGCAGTCAAGACCTCCAGCAGCGGCTCCGCTCTAAAGAACAGGAATTGGAGCAGCTTTTCCAAAAACAGAGAAGGTTAGAGCGACAATGTCGTGACCTTCATAGCGAGCACCAGGTGAGTCGACTGGAGAATGTCAAGCTGAAAATGACCAACGAGGAGCTGTCTCGTGAACTTGAGCACACCTGCCAGGAGCTAGTGTTGGCTCAGGAGCAGCTGGACGTTCTGCAGGAGCAGGCCTCTCGACTGCAGCAGGAAAGAGAGATGGAGATGTACAGAATCACAGAAGGCttgcagagagaaaaacagagctTAATGAAACAGCTGGATCTACTCAGagaaatgaataaacatttgcGAGATGAGCGAGACATTACCTTTCTGAAACGCAGTAATTCAATGAAAAAATCTTCTCGCAAACAAAGACTGAACACATCCTCAGTGAAATACACTGAGAGAAAACCATCTGTCAGGAAAGAAGTTGATAAAGAGGAAGTGACCCAGCGTTCTAACAGGAAGACCCCCTCTTTACGAAACGGTCTCTGTTCATCCTTCAGCACAGGGGATGATGGGAAGCCGGAGGTGGATGGGCCGTCTGAAGATGTAGCTAGAGACTCAGAAGGTGTGAATGATGGAGTGGATGTGGAGGATGCTCCACCGGATGGATGGCCTCTACGTAGAGTCATATCCATCGAAGAGGACCACCTCCCACACCTGCTGCAAGGAGACCCTCACCTCCTCCTCCATCAGCTAAgtgaggaagaagaagaagctcaGGCCAATCTAGAAACCAGCTCCCTGTATCCATCCAATGCGTCCCTGGCCTCTGCTGACTCTCCGCCACCAGTTAGACTGAAGAAGCCGTCTAAGAAGAAATGGATCAGAGGAAACATGCCCTCATCCGCTGCACGGGGTCAGCCAGTCGGAAAGGAGACCCTCCAGCAGGGTCCTGCAGAACGATCCACTGCATCCCCTCAGCGCCTCTTCAAGGTGATTCTGGTGGGAAATTCCAGCGTTGGCAAAACCGCACTGCTGCGACGCTTCTGTGACGGACAGTTTCATTCCTCCACCGCCGCCACTGTGGGCATTGACTATAGCGTGCGAACCCTAAATTTGGGGGACAGTCATGTGGCTCTTCAGTTATGGGACACAGCAGGTCAAGAAAGGTATCGCAGCATCACCAAGCAGTTTTTCCGTAAGGCAGATGGCGTGGTGGTCATCTATGACATTACAATGGAGGACAGTTTCAGATCAGTCCGGCCCTGGCTGGAAAGCATACTGGAGGCTGTAGGCGACCCTATACCCGTCATGCTCCTCGGCAATAAATCGGAcaaggagagcgagagagaagtGCAGACAAAGGAGGCCGATATGCTAGCAGAGGAAGCTAACTTGATGTTCTACGAGTGCAGCGCTTATACTGGAGCTAATGTGCTGGAGGCCATGATTCATCTGGCCAGGGTCCTCAGGGAGCAGGAAGACCGAGTATGGGTAAACACAGTCAGACTGGTGGATCAACCATTGAAGAAGAAGTCCTGCTGCAagtgatcacacacacacacacacacacacacacataaaaacatgcGGATGAAATCACTTTAAGCTTCACGTTTCTTCTTCAAGCCCAATTATATTCAGtagaaataatttaatgtagGCTGAAAGACGACAAATTcactaatatttgttttaaaaatagtataaagtgtaaagttttTTCATGTCAATTTTACAGAGCATTGTATATGTGTGCTCATCTGACGTGTGTCCAACTGTAGATggagtatattatatattatcagGAACGTTTATCAAATGCAGTTATCCCATACAACAAGTGAGTGAGAAAAAAGTCATTCGAGAGAAAATGTGCTTGTTTGTTACTTTCCATTTATTTAGCATTGCAATAGCCTCATTCAACCCACCTGAAGTCTTGCTAGCTTCATGAAACCTAGATTTCAAACTGGCCAGTAAAACCTCATTTGCTTGAACAAGAAGTGTTTCAGTTACCGTTCGTAGAGAGAGTTCAGCTGATGACAACAACACGAAGCACTAAAATCTTCAAATGTATTATTGAGGGAAAACCATCGTCTGGATTCAGCGTCGAGCATGCTGTGCCTCGTTCGTTGTCTTCATCTGAACCGCTCAGGGATCGCTTTACACAAAGGTTGTATGTGACAATGACCTGACAACtgaccaaaaacacaaaaccaaaaaatattaaaaagttaaaactgTCACGTTATGTCacgctaaaataataaataggtcTTGCTTTTGACaagaatgatttaaaatagtGTAGCTGCTCTtagaaaagaattaaaataaaggcAGACGACATGCCAGTGGTCACTATATTAAACGACTCAACACTAACCCAATAAATATAACGCAAGAAAAGCACTTAAATAGAAGCGAAACATCAAATATGAAGTGAAAAATGCCATTCATGCTCTTCTCCGAACTGAAGCCTTTGTTCGATGAGGCACTGTTGTACGATTTCTCATTGCAAATACTGTTCGGTGACACTTTCCTATCTTATAAGGTTAAATAAACACAAGCTTTGACATTCTCGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38876 lncRNA upstream 11613 5204113 ~ 5205305 (+) True G26196
TU38828 lncRNA upstream 94164 5122473 ~ 5122754 (+) True G26156
TU38827 lncRNA upstream 98676 5117982 ~ 5118242 (+) True G26155
TU38820 lncRNA upstream 105289 5111364 ~ 5111629 (+) True G26148
TU38817 lncRNA upstream 112577 5104031 ~ 5104341 (+) True G26145
TU39034 lncRNA downstream 280128 5505072 ~ 5505372 (+) True G26314
TU39038 lncRNA downstream 284359 5509303 ~ 5509795 (+) True G26318
TU39044 lncRNA downstream 288612 5513556 ~ 5513972 (+) True G26324
TU39045 lncRNA downstream 289408 5514352 ~ 5514581 (+) True G26325
TU39053 lncRNA downstream 293989 5518933 ~ 5519157 (+) True G26333
XM_043237966.1 mRNA upstream 44508 5170750 ~ 5172410 (+) True ccdc59
XM_043236024.1 mRNA upstream 148053 5053790 ~ 5068865 (+) True syt10
XM_043236022.1 mRNA upstream 148053 5053791 ~ 5068865 (+) False syt10
XM_043237820.1 mRNA upstream 251721 4958676 ~ 4965197 (+) False dmtf1
XM_043237848.1 mRNA downstream 14459 5239403 ~ 5254016 (+) True tspan11
XM_043237850.1 mRNA downstream 14460 5239404 ~ 5254016 (+) False tspan11
XM_043237849.1 mRNA downstream 14464 5239408 ~ 5254016 (+) False tspan11
XM_043236733.1 mRNA downstream 31460 5256404 ~ 5344872 (+) False sema3aa
XM_043236732.1 mRNA downstream 89080 5314024 ~ 5344872 (+) True sema3aa
TU38659 other upstream 274183 4929471 ~ 4942735 (+) False LOC122343397
TU38663 other upstream 274183 4935929 ~ 4942735 (+) False LOC122343397
TU38543 other upstream 588019 4550163 ~ 4628899 (+) False G25958
TU38544 other upstream 588019 4550163 ~ 4628899 (+) True G25958
TU38370 other upstream 981674 4232908 ~ 4235244 (+) True G25838
XR_006250627.1 other downstream 129388 5354332 ~ 5391626 (+) False pcloa
unassigned_transcript_304 other downstream 173936 5398880 ~ 5398967 (+) True trnay-gua_2
TU39144 other downstream 557000 5781944 ~ 5853381 (+) False LOC122342465
TU39141 other downstream 625485 5850429 ~ 5853381 (+) False LOC122342465
TU39185 other downstream 668041 5892985 ~ 5897771 (+) False LOC122342837

Expression Profile