RNA id: XR_006250786.1


Basic Information

Item Value
RNA id XR_006250786.1
length 3274
RNA type transcript
GC content 0.51
exon number 17
gene id LOC122343470
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8892019 ~ 8941403 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTAAAAGGCACATTTACAGCTGGAAGCCTCATTCTGTCGGAGGCACTCAAGCTCGTTTCGGTCACCCTGGGAGATGTATCAACAGCAAAGCCTGGCATCTGAGCTCCAGACCCCAGCGCTGGAGAAATACGGTCCCACTCATCTCCCACAGGTGGGCCGGTGGCTTCAGATCGCACAATTCCCTGCCCCAGTGTGTGACCACtgtgaaagagaggaaaaagcaCCAGGCTGCCAGGCTGAAGCTGACTCAGAAGCTCTGGCATCTGCCACAGAGAGACTGATGACCCTAGAGGAGCCAAATACGTGACCTCAGTGAACAGGGACAGGGACAGACAGAGGAATCGTGAGATGTCTGTGGTGATGGATGAGTCCCTGCTGGAGCCCTGGGCCACAGGTCAGATAGATGAGAGTGTCCGAGAGCgagtgaaaagaaaaagggatCTGAGCGATGGAGTCGAGACCCCCACGGTATTGCAGCTAAAGGCAAATATAGCTGATGAGAGCTTGATGAACTTCCTCAGAAAGGCTGGTGCAGTGGCACCATCATATTACTTCTGTTTTGTGAAACAAGCTGTCCTGTGGAACAGAGGGCAGCATCACACAgTAACCAGACATGAGAAATGCCCTCCACCCCCGTGTTCTCGTTTTCATGCTCATATGGAGGCCTGGCCTGTTCATTTTAGACCCCCACATTTCCTAAACACGCATCCCAGACCTGGGCCTAATCATCTGGGGCAAAAACAGCGACAGCGGAGTGCTCCACAACCTCAAAGAAGTCCAGATGTCAGGAGGAACCAAAATGTGAATAATTCCAGCAGGAGTGTAGTTCTACCGCATGTATCTGGATGCCTTAATCCAAACAGAGCTTCTCCAGAACTCCTGACAAGTCCTCCTCTGACTCTCAAATTTGTTGATCACCCTCATAAATCCCAAACCCCCAATACACATTTGCAACCGACAGATGAGGAAGGAGATGCATGCTTTGCTTCACAAGATCTGAATCAAGGGCACCACGAACTGGCTGAAAAGGAGTCAATGAGTCCAACAACTCTGTCCACCCCAACAACCCCAAGCATCCCAGCCACCCCAACTACTCCTGGCACCCAAAGTACTCCGAGTAGCCTAGTTACTCCAGGCACACCAAGTTCATCTGTGACCCCAAATTCTCTTTCTGATTTTAGCCGGCCTTCCTCAAGCCAGTTCAGCCGTAGCACTGATCTGAACAGTAGCTTCTCAGATGCCCCATCAGAGAACTTCAGCATTGACCATtgtgaagacaataatacagaTGACAAAGATGTTTCTGACCTTGACCAGTGTAATTATTATCAAGAGCGGTGCTCTACTTCTCTCCCCGAGCATCACTTCACCTCTGCAGGTAGTTACAGTCAGGCCAGTTCACGAATGGATGTCCTTCAAGCATGTCTCTCTAGATCTCTCACCTCCTGCAAGCAAGAAACACCTTCCACTTGCTTGCCAGACACTCCAATTTACACCTCCAAAACCCCTCAATCTCTGCAAACCCCAGCCACCCAACAGTCCACATATGAAACCCTGCACAGACGCCCTGGATCCAGCCAGTCTGGCCTAAGCATTCAGGCACAAAAACCTGAATACTTAACAGTGGATAGTCGATCAGAATGGAACCTTTGGCCTGTGCTTCCTCCCATCATGCCACAGCAAGATGAGCTGCAAGATGAGAGTTTACTGGGAGGGACCCCTGACTCCCTTTCTGACAGGTCACAGTCTGATATCTTTGCTGAGCTGGATGATCTGGCCCCTCGCTCAAGTTCCTGTGCGTCTCCAGACCACCCAGCCGGGAGTCAAACTGACCGATCCTCACCTGCCACAGATCTGAGTCCTGGACTTGCAGCTTTAACTGTGGGATGTGATTCGGGTGATCTGGGATCTTTGTCCCGTGTGCAGCTCCTGCTTTTGGAGCGAAAAGGATCTGAAAGTCCATGTTCCATCCCAAGCCCCGAATGGTGTCGAACTCCGGACGGGGAGGAGTATGAACCAGGCCTTAGAGTCTGGAGCTCGGGCATTCCCCAATATTATCAGTCCACGGTCCCCGACAACCGCAAACCATTAAGTCGCACAAACAGCGGCCAAGATTCTTTGGCAACTTTCAAGGGACGCAGAAAGCGCCCCGGGCTCATCAGTGTGGGGAGTGTATCGAGGACATCATCCAGTTGTTCTCTCAGCTCAAGGGTGTCTGAAAGCAGCTCTGGGAACCGGGAAAAAACCACTTGCGAGGAGCAAGGTTGTGAATCCTCAGATGAGAATGTCCCGCTCTATTTGTCGCCTCTCTCTCCCAGTGCTTTGCTGACAGATAGCTCAACAAACGGCGGGACCATACTGATCCCGGTCCTGCAAGCTGAAAAGCACAGAAACAGGTCCGACAGACTccgagagaagaggaagaggaagaacaaGAAGACTGAGGAGAGGAAGACTAAAGCCCTGCAGATTTACTCCAAGCTTCAGGACGGAAAAGACCAGACAGAGTCCACCCATCAGAGCCCTTGCTCGAAGTTTGAGGACTTTGATTTTCTGGCCAAGTACTGCATCCTCAGTCAGGACAAGTTGTCCATGTACAAAAGGGCTTTTGAGGccgtgagtaaaaaaaaaatcggacaGTTTCCACATCAAAAAGAAcggttttgttcattttcatacGCTGGTAATGACAGTAATCACTTAACTGTCACTAACCCTGACTGTGATGCTCTGTGCCTGCAGGCTGATAGTGATGGAGATGGTTATCTGAGCTGTCTCCAAGTGCTGCTGGCATTGAAAGAGATCATTCCCCCAGAACTTCTGACTGAAGAAGAGGAAATATATGTGTACAGGATTCTGGAGCTGGTTGATTTCAGAGTGACAGAAGGCCTTACGGATCTGCGTCTGTTTGCTGTAGTGGCCAGTCTGGCCCAGAAAATAGCCACACTCGATGATTTCATGCGCTCCCTCATCAGCAAGATGGATTTCAAATCTCTGGAGACGAAGCTTTGCAAAGCCAAGcctTCCCCCTCCCTCGTATTCATGGATTACAGGCTGTAATCTCATTAAAGTGGCCGGCAGTGTACATCCAGTGCAGCGTGCTCTGTAATCAGGCAAAGACATACTGCTCATCTCGGATAAAGCAGAGCAGTTGTTCTTGTTCCTGCTGGAGGCCCAAACAGGGGGTGCTGTGGTGCCAGAGGGCTGCATTGGGGCAGAGCAGCTCCTAGTGGAGCTCAAGGCAGGGGGCATCAGGCCTGAGCACGAGGCATCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40406 lncRNA downstream 6231 8887186 ~ 8887953 (-) True G27279
TU40401 lncRNA downstream 23128 8870491 ~ 8871056 (-) False th2
TU40361 lncRNA downstream 79172 8809767 ~ 8815012 (-) True G27253
TU40363 lncRNA downstream 79172 8809767 ~ 8815012 (-) False G27253
TU40364 lncRNA downstream 79172 8809767 ~ 8815012 (-) False G27253
TU40451 lncRNA upstream 19175 8960446 ~ 8961433 (-) True G27306
TU40633 lncRNA upstream 62652 9003923 ~ 9004223 (-) True G27417
TU40644 lncRNA upstream 82606 9023877 ~ 9024077 (-) True G27425
XR_006250778.1 lncRNA upstream 388736 9330007 ~ 9341739 (-) True LOC122343442
TU40714 lncRNA upstream 557445 9498716 ~ 9504000 (-) True G27469
XM_043236987.1 mRNA downstream 9168 8874712 ~ 8885016 (-) True pah
XM_043236988.1 mRNA downstream 19586 8870215 ~ 8874598 (-) True th2
XM_043237544.1 mRNA downstream 37134 8843207 ~ 8857050 (-) True LOC122343226
XM_043237543.1 mRNA downstream 38885 8843207 ~ 8855299 (-) False LOC122343226
XM_043237815.1 mRNA downstream 90344 8780290 ~ 8803840 (-) False LOC122343383
XM_043237537.1 mRNA upstream 36607 8977878 ~ 9000457 (-) True nrip2
XM_043237538.1 mRNA upstream 37912 8979183 ~ 9000458 (-) False nrip2
XM_043237673.1 mRNA upstream 63548 9004819 ~ 9009304 (-) False klhl42
XM_043237672.1 mRNA upstream 63548 9004819 ~ 9009304 (-) True klhl42
XM_043237137.1 mRNA upstream 77059 9018330 ~ 9023432 (-) True dram1
TU40311 other downstream 426156 8460506 ~ 8468028 (-) True G27232
TU40263 other downstream 644959 8247911 ~ 8249225 (-) False LOC122343432
TU39958 other downstream 1335731 7555115 ~ 7558453 (-) True G26951
TU39663 other downstream 2154589 6737641 ~ 6739595 (-) False il22
TU39610 other downstream 2532741 6350503 ~ 6361443 (-) True msrb3
XR_006250745.1 other upstream 62989 9004260 ~ 9009304 (-) False klhl42
XR_006250565.1 other upstream 330701 9271972 ~ 9300179 (-) False uhrf1bp1l
TU40990 other upstream 1414440 10355711 ~ 10357205 (-) False zgc:193726
XR_006250794.1 other upstream 1417153 10358424 ~ 10363566 (-) True zgc:193726
TU41528 other upstream 2480798 11422069 ~ 11424083 (-) False ppfia2

Expression Profile