RNA id: XM_043237963.1


Basic Information

Item Value
RNA id XM_043237963.1
length 3206
RNA type mRNA
GC content 0.47
exon number 11
gene id tmtc2a
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5126801 ~ 5156735 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCCAAACATCACACGCGTGTTGTGCGTTTGATAGGAGGGTGTTACTGCAACGGGATGTTTCACTACGGCTTTCTGGACGAAGAGCAGCCGAACACTCTCCGTCCGTTAGCGAAAGCACGCGGTGCGAGCAGATATGCGAGCTGAACCCACAGCTCTGGACCGAGAATGGGTTAGACATGTTTGAAACTCTTCCCATCTCGCCGCGGGAGCAAAACAATGAGGACGGCAGCGACCGGAGACGGGGACTGATCGGTGTCATTCATTCCTGGACTTTCTTCGCTCGTCTTTGTCGTTGAGATGATAGTGGAGCTGGTGTGCAGCGCGGTGGCTCTGCTCCTCTACATGAACACACTGAGCGCGGATTTCTGCTACGATGACAGAGGAAGAACATGAGCTTGCTAGTCAGTCTAGCATGGCTGGTTGGTTGGGGGATGATTCTTCTAGCAGCTCGCTTTTACTGGATGGGAAACAAACCTCCAAACTTTTCCAACTCTGACAACCCTGCAGCCGACTCGCCTCACTTCCTGACTAGAGCGCTCACTTTCCTGTACCTGCCAGCCGTCAATGCCTGGCTCCTCCTCTGCCCTGACAAACTCAGCTTTGATTGGTCAATGGATGCCATTCCTCTGCTCAGATCCATTGCTGATTGGCGGAACCTTCAGTCGGTTTTGTTTTACTCAGGATTCGCTCTCATGTCATGGTTTGGCTTGAGAAACCCATCACTACAGTCCTCTAAAAGCAGCGAAACCAATGGAAAATCACATATGAGCAATGGAAAGTCTGCAACTAATGGATACACTCATAATCATGACGACAATCACTACAGGGACTCTCCCAAAAGAAATGGATATCACAAACCACccaaatcacatccaaaatccCTCCCAGCCACAGAGAGTGTGGTGGTCTTTTCCCTCGGGCTGCTGGTTTTGCCCTTCATCCCAGCCACTAATATGTTCTTCTACGTGGGCTTTGTGGTGGCCGAGCGGGTGCTGTACATCCCCAGTATGGGCTTCTGTCTGCTCGTGACCGTTGGGTTGAGGAGCATGTTTGTTCGCTGCAGGTCGAGATGCTCCAGAGCGTTCCTGCTGAGCTGTGCTGCAGGTCTCGTGCTTCTCTACAGCCTGAAGACCGTGAGGAGGAACCAGGACTGGGAGAGCGAGGAGATGCTGTACAAGTCTGGCATTGCTGTAAACCCTGCTAAAGCTTGGGGTAACCTGGGTAATGTGCTGAAGAACCAGGGAAAGATGGCTGAGGCAGAGAGAGCATATAGAAATGCTCTTTATTACCGTGGAAATATGGCAGATATGCTCTACAACCTTGGTTTGCTGCTACAAGAGAGTGAGCGTTTCTCTGAGGCTCTGCGTTACTACAAACTGGCCATCGGGAGCAGACCGACTCTGGCCTCGGCATACTTGAACGTGGGCATCATCCTGGTCTCCCAGGGCAATATCGAAGAGGCCAAGCGGACATTTCACACTTGCGCTGACATCCCCGATGAGAACCTGAAGGACCCTCATGCCCACAAGAGCTCCGTCACCAGCTGCTTGTACAACCTCGGCAAACTGCTTCATGAGCAGGGCCAGCACGAGGAGGCGCTGTCCATGTATAAAGAAGCTGTCCAAAAAATGCCACGACAGTTTGCACCGCAGAGTTTGTACAATATGATGGGTGAGGCGTATATGAGGATGAATAATCTAGAGGAGGCAGGGCACTGGTACAGAGAGTCACTGAAGGCCAAACCTGACCATATTCCTGCCCACCTGACCTATGGAAAACTGCTGTCTATCATGGGACAGAAGTCTGAAGCAGAGCATTACTTCCTGAAGGCAATAGAGCTGGATCCTGCCAGAGGAAACTGCTACATGCATTACGGTCAGTTTCTGTTGGAAGAGTCTCGTCTGGGAGAGGCAGCAGCGATGGCTCAGAAAGCTGCAGAGCTGGACAGTTCAGAGTTTGACGTGGTGTTCAGCGCTGCTCACATGCTCAGACAGGCCAGTCTGAACGAGGCAGCTGAAAGGTATTATGGGAAGGCAGCTGATTTAAGACCTGGTCATCCTGCAGCTCTGATGAATCTCGGGGCGATTCTTCACCTTAACGGGAAGCTGAAGGAAGCCGAGAGCAACTACCTCCGAGCGCTGCAGCTCAAACCAGACGACCTCATCACTCAGTCCAACCTCCACAAACTCTGGAACGTCATGCAGAAACAGGGTCTGCGAGCCTCTGGGACGTGATCTGCTGCTGGGACTAATTCAGATACTTCTGGTCTGATTTCAGCTGGAGCTCTGTGCTGGTTCAGCGCATTGGTGGAACTGGTTAAAAGTTTAGCTAGTCTGGAGGAGGAGAATGACGATGGAGCCTCTGTGAAGTTGTGCTTTGGACAGTAAAGACCCTTATTAGTGTAAAAGAACAGTAAAGTGCACAAACACAGGAGAGAGGGTGACTGCATCACCCCGGATTGTATTCTTCTGAGAGCACTGACCATTTGGTtttgggtgatttttttttttttatgaaatgactcttaaaaataaaagtgttgagATTGTCATtatgttgatatttaaaatgcCTCCTCTTAATTTATTGTTGATGAATCAACAGTTTGTTAGGGTTATGAGGGTTGTTTATAGTACTCAATGTCTCCCATCACTCAGACCTCGATCTGTTATGAAGCactattattatgttttgtCTAATTTCAGGCttttaccaaaacattttaccaCAGTAAAATGTCTATTTGACCAGAAATAAAGAATTGTATTGCAAGAAATGACCAATTTCTCTTGTAGTAAGCATCGAGATGCTCTCTGCTGCCGTAATACAAGGACAAGACACTTATCGTGTCTGGATAAGTGTTTTTCTGCCTGCTATTGGAAGACTAACGCGTTACAGTTTGAGATGTACCTTACAGCCTTGATGTTTGCTGCCCTCTTGTGGTTGAGTAACGCACAAGTCCACTTATTTATTCTTGCTGTAGTGAATCAAAGCGGTTAACTTTAGTGTGCCATTTTTCTAACAATAATATTGGAACTGAAttgacatttagaaaatataataataataataataataataataatgctactGTAGGGTTGCAAATTTGTCAAATTTGAGAGTTTgcaaactatatattatataatttttttaatattttgtaattattaatgacGATATGTATTCctttgtttgaataaaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38912 lncRNA downstream 2286 5124068 ~ 5124515 (-) True G26226
TU38911 lncRNA downstream 4051 5122472 ~ 5122750 (-) True G26225
TU38906 lncRNA downstream 32287 5093791 ~ 5094514 (-) False LOC122343483
TU38905 lncRNA downstream 39862 5085836 ~ 5086939 (-) False LOC122343483
TU38793 lncRNA downstream 117803 5008626 ~ 5008998 (-) True G26121
TU38914 lncRNA upstream 2350 5159085 ~ 5159407 (-) True G26228
TU38925 lncRNA upstream 83596 5240331 ~ 5241780 (-) True G26237
TU38983 lncRNA upstream 185763 5342498 ~ 5344870 (-) True G26270
TU38984 lncRNA upstream 190050 5346785 ~ 5347055 (-) True G26271
TU38994 lncRNA upstream 230031 5386766 ~ 5389185 (-) True G26281
XM_043236960.1 mRNA downstream 23900 5100364 ~ 5102901 (-) True LOC122342827
XM_043237970.1 mRNA downstream 32161 5085090 ~ 5094640 (-) True LOC122343483
XM_043237960.1 mRNA downstream 43126 5077652 ~ 5083675 (-) True LOC122343475
XM_043237788.1 mRNA downstream 103211 5009871 ~ 5023590 (-) False ppfibp1a
XM_043237965.1 mRNA upstream 4375 5161110 ~ 5170510 (-) True mettl25
XM_043237961.1 mRNA upstream 15830 5172565 ~ 5180099 (-) True LOC122343476
XM_043237964.1 mRNA upstream 26732 5183467 ~ 5189265 (-) True LOC122343478
XM_043237968.1 mRNA upstream 40311 5197046 ~ 5201684 (-) False LOC122343482
XM_043237967.1 mRNA upstream 40311 5197046 ~ 5201684 (-) True LOC122343482
unassigned_transcript_303 other downstream 361634 4765080 ~ 4765167 (-) True trnay-gua_1
unassigned_transcript_302 other downstream 361861 4764853 ~ 4764940 (-) True trnay-gua
XR_006250792.1 other downstream 368974 4731224 ~ 4757827 (-) False LOC122343492
TU38442 other downstream 859306 4264926 ~ 4267495 (-) True G25880
TU38194 other downstream 1522531 3602358 ~ 3604270 (-) False LOC122342823
unassigned_transcript_305 other upstream 560311 5717046 ~ 5717133 (-) True trnay-gua_3
TU39166 other upstream 562277 5719012 ~ 5720250 (-) True G26405
TU39169 other upstream 573283 5730018 ~ 5736946 (-) True G26408
TU39171 other upstream 573283 5730018 ~ 5736946 (-) False G26408
TU39173 other upstream 573283 5730018 ~ 5736946 (-) False G26408

Expression Profile