RNA id: XM_043237966.1


Basic Information

Item Value
RNA id XM_043237966.1
length 1020
RNA type mRNA
GC content 0.38
exon number 5
gene id ccdc59
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5170750 ~ 5172410 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTTAACGTGAAACATGGCACCTTCAAAACAAAACGCAAAAAGTAAAGGTCCGATTGAAGGAAAACACTTCAATAAATTCGCACACGGTGGTTTATCACACAATAccaaaaggaaaagaaaatgggTTCCGGAGAACAAAGGTTTTGATGGTAGTTTAAAAGAGGGTCAGGGGTTTGCCTTCAAAAGgaaggagaaaataaaacatgaatataacAAACTTctcagaaaggaaagaaagaaaatgcaacCACCAAGAATCCAGTTAGAGGACAAATATCCCGAGCATCTGAGGCATCTCTACCTGGCCGAAAGAGAACGACTGGacgaagaggaagaagagaaaaggaagaaaagatgTAAAGGGCGAGCAGTAGATGAAGAGAAAGACGAAGACGATGAACTAAAAACTGGGTTGGATTCACCTTTCAATGAGAAACACATCTCAAACACAACGACTGATCAAACTACCGTCCCTGATTCGGCGAATGAACCAGCAGAGCCAGACAGCTCCAGTAAGACTCCAttcatccaaaaaaacaaaaagacatcgTATCAGAAGACAAAGCTAGAATATGAAAGGATACAGGAAGAACGCGCACGAAAAAGAGAGGAATTCTTGAAAGACAAAGCTCAACGAGAGGAGGCTCTGAAGAAATATAAGGAGAAGAAAATGGCAACATATCagttgttacaaaaaaaaacaaagaagggTCAGCCCAATCTCAATCTGCATATGGATCTATTGCTGGAAAAGATTCAAGCTCAGCGCAAATAATTCAGTGTGATCCAAAACAATCAGACTGTAAAGTTAAAATTAACCATCTCACAATAAACTGGATTTTGGGTGAGGTTTTTTTACTTCAAGGATGTGTATATCTTTGCATATCTTTGTTTTTCCCAGTAATATttcttgtaaataaaatattaaattatggtGGTCTTAAGTTAGTTAAAGCTGACAATACAAAACGAATGCTATGACGGTAaacttataaataaacatgaagcTTGCTAATGTC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38828 lncRNA upstream 47996 5122473 ~ 5122754 (+) True G26156
TU38827 lncRNA upstream 52508 5117982 ~ 5118242 (+) True G26155
TU38820 lncRNA upstream 59121 5111364 ~ 5111629 (+) True G26148
TU38817 lncRNA upstream 66409 5104031 ~ 5104341 (+) True G26145
TU38805 lncRNA upstream 88464 5082057 ~ 5082286 (+) True G26133
TU38876 lncRNA downstream 31703 5204113 ~ 5205305 (+) True G26196
TU39034 lncRNA downstream 332662 5505072 ~ 5505372 (+) True G26314
TU39038 lncRNA downstream 336893 5509303 ~ 5509795 (+) True G26318
TU39044 lncRNA downstream 341146 5513556 ~ 5513972 (+) True G26324
TU39045 lncRNA downstream 341942 5514352 ~ 5514581 (+) True G26325
XM_043236024.1 mRNA upstream 101885 5053790 ~ 5068865 (+) True syt10
XM_043236022.1 mRNA upstream 101885 5053791 ~ 5068865 (+) False syt10
XM_043237820.1 mRNA upstream 205553 4958676 ~ 4965197 (+) False dmtf1
XM_043237821.1 mRNA upstream 205553 4958881 ~ 4965197 (+) True dmtf1
XM_043237834.1 mRNA upstream 225870 4935945 ~ 4944880 (+) True LOC122343397
XM_043237939.1 mRNA downstream 44049 5216459 ~ 5224944 (+) False cracr2ab
XM_043237941.1 mRNA downstream 44054 5216464 ~ 5224944 (+) True cracr2ab
XM_043237940.1 mRNA downstream 44508 5216918 ~ 5224944 (+) False cracr2ab
XM_043237848.1 mRNA downstream 66993 5239403 ~ 5254016 (+) True tspan11
XM_043237850.1 mRNA downstream 66994 5239404 ~ 5254016 (+) False tspan11
TU38659 other upstream 228015 4929471 ~ 4942735 (+) False LOC122343397
TU38663 other upstream 228015 4935929 ~ 4942735 (+) False LOC122343397
TU38543 other upstream 541851 4550163 ~ 4628899 (+) False G25958
TU38544 other upstream 541851 4550163 ~ 4628899 (+) True G25958
TU38370 other upstream 935506 4232908 ~ 4235244 (+) True G25838
XR_006250627.1 other downstream 181922 5354332 ~ 5391626 (+) False pcloa
unassigned_transcript_304 other downstream 226470 5398880 ~ 5398967 (+) True trnay-gua_2
TU39144 other downstream 609534 5781944 ~ 5853381 (+) False LOC122342465
TU39141 other downstream 678019 5850429 ~ 5853381 (+) False LOC122342465
TU39185 other downstream 720575 5892985 ~ 5897771 (+) False LOC122342837

Expression Profile