RNA id: XM_043237972.1


Basic Information

Item Value
RNA id XM_043237972.1
length 3016
RNA type mRNA
GC content 0.50
exon number 12
gene id prdm4
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 7469919 ~ 7477407 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCACCTTGAGTCATACACGGTTTGCCTTTAGCcatgttattgttttcatcttCCACGGAAGGATTAATATTTGCTCTTTATAATCCTAGAAAGCATCCATCACACCAATGCCTTAAGTGATCTGTGCTGTCAGCATGAATGACATGAACCTCAGCCCAGTTGGCATGGACCAGCTCAGCGTGCCGCCTGTGAGTGCAAGTCACCTTGGCCTCCCCACATCCCCAACGCACAATCCTATCACCACTTCAGGCATGCCAGTAGCTATACCCAGCTTGGGTCCGTCACTTGGGCCTCTTCCTTCTGCACTGTCCCTGATGTTACCCATGGGTCCTTTAGGGGACAGAGGTGTTATGTGTGGCCTTCCGGAGAGAAATTATACATTACCACCTCCTCCATACCCACACATAGAGAGCAGCTACTTCAGACATATCCTTCCAGGTATTCTGTCATATCTGGCAGATCGTCCCCCTCCCCAATACATTCATCCCAGCAGCCTTAACATGGATGGGACTCTTTCAGTGTCCAACAACAACCCCTCTGGTTTAGACCCATACAGCGGCCCCGGCGGCCCTCTAGAACAAGGCCTGGTAACCCTAGACACAAGACAGGTCGGAGGCCAGGCTGATCTCCACCAAGGAGGCTCTCACGAGGTTCAGCTAGATGCCACAGGACTAACCATGGAGTCTCGTGTAAGTAGTCCTATGTCTCCCGATGGAATGGAAGAGGACCTGGCTACCATGGAAGGTGTCGTGGTGGCGGAGACGCAGCAGCAGATGGGCACCAGGCCTCAGCCTCATGAGGGTTTGGCCGGTGTGGACTCCTCAGGAGGTGTGATGCCCCTCCACGGAGCGGGGCTGGAGCTTCCGGTGGTGATGGAGCAGGAGCACATGGGCGGCAGAGTAGGGTCCAACACTACAGGAGCGGGCGGACCAGGGACGCTGAGTGAAGCCTTGCACTCCACCGGAGAGCTGAACTCCGGGGTGGTTAGTGTGGTGCTCACGGGGGCCATGCCACCTCAAGCTCAACTAGAATCGGTATCTCTGCATGGACCTACAGGAATGGGACTCGAGCCTGTTAATGTGTCACCCATCACCGCAGAAGTGTCTCTTGGGCCGGACAACAGTCTGGTGCTAGTGAACTCTACCTTACAGCTAGAAGACTCAACATCTAATAAGGAAAACATGGCCACTGCCTTCAACATATggTGCACTTTATGTGAGCGGTCATATCCGTCGGACTGCCCTGAGCATGGACCTGTCACTTTCATCCCAGACACGCCCATTCAGAGCAGAGCCCGCCTCTCTCTGCCCCGCCCCCTCTGCCTTCGCATTTCTGTAGCTGATGAGCCCATTGGTGTTTTTGCTAGAGAGACCATACCCTCCAGGACCTGCTTTGGGCCGATGGTCGGACAGCACTGTAGCAGTGTAGAGCTTACAGACTGGTCTGATAAGGATACTCCTCAAATATGGAAGATGTTCCATAACGACATCCAAGAGTTCTGTATCGTGACGACAGATGAGCATGAATGCAACTGGATGATGTTCGTACGGAAAGCAAGAACCACAGAGGAACAGAATCTCGTGGCATATATTGACAACGGGAAGCTGTACTTCTGCACGTCCAGAGAGATTCTGCCGGATCAGGAGCTGTTGTTTTACTACAGCAGGGACTACACCAGACAGCTAGGTGTTCCCAGAGTGCCGGAGGGACAGATTTGTCATTGCGGCAAAGAATGTGGCTCTTTCACAGAGTTCAAGTCGCACCTGAGCAGCCACGCCCAAAGTCACAGCCCCTCCCAGGACCACCCTGCTCACGCTGCACACAACCAGTCCCGGTCCCAGGAGAAGGTGACCAACGAGTCGTCCCAGTCCGCCTCCTCGCCGCAGTGGCAGTGCCACTCGGATGTGAACGAGCACTCCAGCAGCAGCGGCGGCAGTAACGGGCACGGTCGCGAGAGGAAGTTCAAATGCAGCATGTGCACTCGAGCGTTCACTACGTCGACCAAGCTGAACGTGCATTTCATGGGGCACATGGGCATGAGACCACACAAGTGTAGCTACTGCAGCAAAGCCTTTAGCGATCCCAGCAATCTCAGGAAACACCTGAGAATCCACACAGgCCAGAAGAACTTTAGGTGCACAGTATGTGGGAAATCTTTTACTCAGAAAGCACATGTGGAATCTCACATGGTTATACACACTGGTGCCAAGAACATTAAATGTGATCATTGTGACAAGATGTTTGTGAGGAAGCAAGATCTCAAACAGCACATGTATTCACATTCACTAGACCGTCAGATAACTTGTCCAAAGTGTAACAAACAGTTCTTGAAGACCGACCATCTCAAAAAACACCTGAACTCTCACGACGGGAAGCGGGACTTCATCTGTGAAAAGTGCAACAAGGGCTTTCTCACTAAATACCACCTCACGCGCCACCTCAAAATCTGCAAAGGTCCTAAGATCGGTCGAGGGCCAGCGCAGGGTGAGGaaggggaggaggaggaagacgaggaggaagaggatgaggaggacgaGAGAGAAGCTGAGGGACAAATCAATCCAGCCAACGAGGAGGACTGTGGAATAGGGATGAGAGGATacacttcagaaaaaaaatacgtAACGGGATGAACCCAGACCTTATCTAGCCTATTTATTTGTCCTTTATTGTGTGTCCCCTTTCTACCCGTCAGCCTTTATTTCCTGATGCCAAAATTTGTGTACgtctaaataagaaaaaattatgcatCACATATTTATAAGTCGAGTGTCGCTGTTAAAATGATATATCATTGGCCAAACAGTAAACAAAAGACAttgccttttttatatttttttctttacattgtttttgtggGAAAACTTATTTGACCAAATAAGCCACTGATAATAAGTCGgtttaactgaaataagcctggTTTATTTaggtaaacttgttttatgaaactcGTTCACTGGAGCCATGCCTCTTCTGTACTCTAatgttattgtaaataaataaatattgagttTTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250789.1 lncRNA downstream 13278 7399666 ~ 7456641 (-) True LOC122343472
XR_006250790.1 lncRNA downstream 13278 7411325 ~ 7456641 (-) False LOC122343472
TU39864 lncRNA downstream 13321 7430094 ~ 7456598 (-) False LOC122343472
TU39813 lncRNA downstream 96324 7373173 ~ 7373595 (-) True G26846
TU39780 lncRNA downstream 150194 7319502 ~ 7319725 (-) True G26832
TU39965 lncRNA upstream 377342 7854749 ~ 7856511 (-) True G26956
TU40056 lncRNA upstream 550133 8027540 ~ 8027742 (-) True G27031
TU40059 lncRNA upstream 553356 8030763 ~ 8034539 (-) False G27032
TU40060 lncRNA upstream 553356 8030763 ~ 8035012 (-) True G27032
TU40084 lncRNA upstream 643939 8121346 ~ 8121708 (-) True G27051
XM_043237539.1 mRNA downstream 106 7461114 ~ 7469813 (-) True akr1b1.2
XM_043237541.1 mRNA downstream 153 7461114 ~ 7469766 (-) False akr1b1.2
XM_043236618.1 mRNA downstream 151864 7225509 ~ 7318055 (-) False LOC122342649
XM_043236619.1 mRNA downstream 151864 7225509 ~ 7318055 (-) False LOC122342649
XM_043236620.1 mRNA downstream 151864 7225509 ~ 7318055 (-) True LOC122342649
XM_043236515.1 mRNA upstream 3942 7481349 ~ 7494492 (-) False slc26a5
XM_043236514.1 mRNA upstream 3942 7481349 ~ 7493469 (-) True slc26a5
XM_043237121.1 mRNA upstream 40785 7518192 ~ 7527126 (-) True klhdc10
XM_043237122.1 mRNA upstream 40785 7518192 ~ 7527125 (-) False klhdc10
XM_043237126.1 mRNA upstream 95474 7572881 ~ 7588417 (-) False nrf1
TU39663 other downstream 730324 6737641 ~ 6739595 (-) False il22
TU39610 other downstream 1108476 6350503 ~ 6361443 (-) True msrb3
TU39270 other downstream 1529920 5938055 ~ 5939999 (-) True mrps33
TU39262 other downstream 1556381 5909473 ~ 5913538 (-) True G26462
TU39180 other downstream 1616553 5850404 ~ 5853366 (-) True G26414
TU39958 other upstream 77708 7555115 ~ 7558453 (-) True G26951
TU40263 other upstream 770504 8247911 ~ 8249225 (-) False LOC122343432
TU40311 other upstream 983099 8460506 ~ 8468028 (-) True G27232
XR_006250786.1 other upstream 1416777 8894184 ~ 8941271 (-) False LOC122343470
XR_006250788.1 other upstream 1418385 8895792 ~ 8941271 (-) False LOC122343470

Expression Profile