RNA id: XM_043237973.1


Basic Information

Item Value
RNA id XM_043237973.1
length 2269
RNA type mRNA
GC content 0.42
exon number 11
gene id LOC122343486
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1666645 ~ 1670146 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTACTGTCACAGAGCTTTAAACATAAAGCATGGGCCAGTGACAGCTAGTGAATAACTGATATCTGAAGCCTAAAACATCAAGAAAATCTTTCCAAATCTTTCAAGACTGTAATATTTGGAGATCATCATGAGAATAAGCTATGTAAAGACATTACTTCCAGTCTTGTCTGTTACTATGTTGTTTCTTTATATGAGCTTATTGAGAAGGAAAATCCAAATGCAAGACAAGCAGCTCCATCAAGTCCAGCAGAACTTCTCGTTACACAACGCACTTCTGCTCAACAAGCTGGACAAACTGGAGGTTCATTTAGTAGCAGTGGaagAGAGAAGCCTCAAAAAGAAGAAGCCAGCAAAGAAGCTGTTTCCAAAGTCATACCTTTTCCAAAAATGGACAGTTGAACTTTCTGAGGATGACCAGAGGAAGGCTGAGGTTCTCTTTCAGAAATATGGCTATAATGCTTTCCTCAGTGACCAGTTGCCTCTGGATCGGGAGCTGCCGGAAACTCGAGATCACAGATGCATTGGTCGTGAATACCCCCACAATCTCCCCACCCTCAGCGTGGTGCTGATTTATCTGGACGAGGCTCTGTCTGTCATTCAAAGAGCCATTTGCAGCATCATCAACAGAACTCCAGCCCACCTGCTCAAAGAGATCATACTGGTAGATGATCACAGCACAAATGAAGATCTGAAAACACAGCTCCACGTTTATATCAGCTCCATCAATGAGAAGCACCCAGGTCTGTTGAAGATGGTGACCCATTCAGAGCAGAAAGGACTTTCCCAGGCCAGAATCTCAGGGTGGAAGACTGCAACTGGGGATGTGGTTGCCATTTTGGACGCCCACATTGAGGTCCATATCAAATGGGCAGAGCCTCTGCTTGCACGTATCCAGACTGACCGTACGCTGGTCCTGAGTCCGGTGTTTGATAGAATCAATTACTATGACCTTCAAGTGACAAACTATTTCGCATCTGCTCATGGTTTTGACTGGGCTCTCTGGTGCATGTATGTGGGATTTCCACAGAAGTGGTATGATCAAAATGATCCTTCACAGCCAggaaaGAGTCCCTCTGTAATGGGAATACTTGTGGTTGATCGTCTGTTCTTTGGAGAGATTGGGACTCTAGATGGAGGTATGGAGGTGTACGGAGGAGAAAATGTTGAATTAGGAATACGGGTGTGGCTGTGTGGAGGAAGTATAGAGATTATACCATGCTCTAAAATTGCTCACATTGAGAGGGCACACAAGCCATATGTAGCTGATCTTAGAAATGTCATGAAAAGAAATGCCCTGAGAGTGGCAGAAGTTTGGATGGATGAATACAAGATAAATGTGAATATCGCCTGGGGTCTTCCTATACAGAACCATGGTGTAGATATTGGTGATGTATCGGAGAGAAAGAAACTGAGAGAAAAGCTGAAATGCAAGCCATTTAAATGGTATCTGGAAAATGTCTATCCTGAGTTAAATCCCTTTAATTTATTAGGTTATGGAGTGctgattaatGATCTGCAAACAAGGTTATGTTTGGATAAGGGGCCATCTGAGGAGAACACTCCCATTTTATATCCATGTCATTTCATGGGATCTCAGATATTTTATCATACCACACGTGGTGAGATATTTGCACATCCCCTTGAGTCCCTTAAAAACAATAGGAACCGATGTCTAATTGATCCCGGCTCAGGCAGGTTTCCAGTGCTGTCCTGGTGTTCAGAAACTGAGAAACCAAAACACATGTACTGGGACTTCAAACAGgGCCAGGCCATACAGAACAGAGAAACCAAACGCTGTCTGGAGATCAGCACTGAACAGACAGGAAATTATGAAAAGAACGTTTTTCTTCAGGACTGCAGAGACCAACACTGGAAGATACAGAATGTAATTTAGGATTTTTTAAGATATAATCAAACTATATAAACACAGCTAACATTCTGCTAAGCAATGAACTGAAAGAGACTCTGAAAAACTTTCCTATTTCAACTCATCTACCCTATTCCTAACAGGACATGATGCCAGTGTTTAttccaaaaataattaatcCAAAACttctctcatcatttactgaGCAGAAAACTGTTGTTTACcatacaaaaaaagtgaattctGTGAAAATACTGACTTACATCATACAGCCCTCCTGGAGCATTTCCCATCTGCGTGGAGTCGTATGTCTTTTCATGTAGCTAGCTATAAATTCACGTCTATCCTTTTTGAGAAATGTATGTTACatgtgataaaaaataaaaaagattgcATGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37351 lncRNA downstream 508 1665838 ~ 1666137 (-) True G25127
TU37350 lncRNA downstream 2745 1663073 ~ 1663900 (-) True G25126
TU37349 lncRNA downstream 4038 1662345 ~ 1662607 (-) True G25125
TU37348 lncRNA downstream 5257 1660605 ~ 1661388 (-) True G25124
TU37323 lncRNA downstream 71357 1594720 ~ 1595288 (-) False selenoo2
TU37364 lncRNA upstream 18212 1688358 ~ 1688894 (-) True G25133
TU37365 lncRNA upstream 18862 1689008 ~ 1692325 (-) True G25134
TU37370 lncRNA upstream 45765 1715911 ~ 1716264 (-) True G25137
TU37397 lncRNA upstream 79232 1749378 ~ 1752092 (-) True G25152
TU37399 lncRNA upstream 82213 1752359 ~ 1753641 (-) True G25153
XM_043236298.1 mRNA downstream 8380 1655036 ~ 1658265 (-) True si:ch211-214j24.14
XM_043236299.1 mRNA downstream 9048 1655036 ~ 1657597 (-) False si:ch211-214j24.14
XM_043236318.1 mRNA downstream 11819 1653598 ~ 1654826 (-) True ccdc167
XM_043236317.1 mRNA downstream 37990 1625295 ~ 1628655 (-) True si:ch211-214j24.10
XM_043236315.1 mRNA downstream 44764 1618977 ~ 1621881 (-) False apex1
XM_043237974.1 mRNA upstream 5056 1675202 ~ 1678612 (-) True LOC122343487
XM_043237568.1 mRNA upstream 10803 1680949 ~ 1683573 (-) True rad51ap1
XM_043237838.1 mRNA upstream 14983 1685129 ~ 1687279 (-) True fgf23
XM_043237589.1 mRNA upstream 23405 1693551 ~ 1697391 (-) True fgf6b
XM_043236188.1 mRNA upstream 35303 1705449 ~ 1708797 (-) False tigarb
TU37319 other downstream 11838 1653591 ~ 1654807 (-) False ccdc167
XR_006250650.1 other downstream 48347 1609360 ~ 1618298 (-) False zgc:113263
XR_006250649.1 other downstream 48347 1609360 ~ 1618298 (-) False zgc:113263
TU37001 other downstream 596549 1069160 ~ 1070096 (-) True G24875
TU36940 other downstream 733537 908946 ~ 933108 (-) False pik3cg
TU37444 other upstream 231697 1901843 ~ 1902567 (-) False rsph9
XR_006250653.1 other upstream 372807 2042953 ~ 2088579 (-) True cald1a
XR_006250644.1 other upstream 632181 2302327 ~ 2375716 (-) False dock4b
XR_006250645.1 other upstream 634200 2304346 ~ 2375716 (-) False dock4b
TU38086 other upstream 1350916 3021062 ~ 3021457 (-) False LOC122342805

Expression Profile