RNA id: XM_043237979.1


Basic Information

Item Value
RNA id XM_043237979.1
length 2700
RNA type mRNA
GC content 0.47
exon number 14
gene id recql
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8953947 ~ 8961233 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctgtgtttgaCAGTGCCGGCGAAGTGTACCCTTTCTAAAGTGCATTACGCAAAACCAATGTAGATATTGAAACGCGTACATCTAGTCACATTTAACGTGTTTGTGATAGAAAGTTTGAGAAGCTCTCGTCTCGTCCGGACTCTTGTGTTTCCAGTCCCGTGATTGGTCAGTTTCCCGTTTAATGGTCGCGTGGGGCAACGGGGAATTCATTCGGTGCAAACAAGAGAAAGTGAAGAGAAGCACACTCATGATCATTTAGGGAAGATGCTCAAGCTGAACTGGACTCGGTGGAGGCAGAGTTGGAGATGGTGGAGCTGCAGATCTCTGAGCTGCTGGAGAAACAGACGAAGCTGAACTCCAGGAAAAACAAGCTCCTGCAGATCCTGGAGGGAGCCTGCAGCTCGGCCCAGCCCTCTGGATCCAGCAAACCTCCCAAACCATCATTCAGCAAACAGGACTTTCAACACTATGAGGAGTCAGATTTCTCATGGTCTAAAGAAGTTCAGGCGagtctgtgtagcgtgttccaGCTCTCTAAATTTCGTCCGCTGCAGCGGCCGGCCATAAATCTCAGCATGTCAGGAAAAGACCTTTTCCTGGTAATGCCCACTGGGCGAGGAAAAAGCCTGTGCTATCAACTGCCAGCCCTCTGCTCTAAGGGTTTTACGTTGGTCATCGCCCCATTGGTGTCTCTAATGGAGGATCAGCTGATGTATCTGAAGTCCGTTGATGTCCCGGCGGTAACTCTCAATGCCTCCAGTACAAAGGATGACTCCAAGCGGGTCTTGGCGGGGATGATCGACAAAAACAGCCCCTTCAAGTTGCTCTATGTAACCCCGGAAAAAATCGCCAAGAGCAAGCTGCTGATGTCCAAACTCGAAAAGGCCTACAACATGGGTCTGTTGGCGCGCATTGCTGTTGATGAAGTCCACTGCTGCAGTCAGTGGGGGCATGACTTCAGGCCAGatTACAAGCTCCTGGGTATCCTAAAGCGACAGTTCCCCAAAGTCCCATTGGTCGGCCTGACTGCCACTGCAACCAGCAACGTGCTTAAAGATTGCCAGAAGATTCTGTGTGTTCAAGAACCCATCACTCTGACAGCACCATTTAACAGACCAAACCTTTACTATGAAGTTCGTTTTAAAGACAACGAAGGCTGTACCGACCAAATTGCAAAACTGATTAGAGAAAGATATAAAAACCAATCAGGAATCGTATACGTGTTCTCCCAGAAGGATGCAGAGGTTGTGGCTACAGACCTGCAGAAGAGAAACATTCTTGCCCAGCCATACCACGCCAACATGGAGCCTTCAGACAAGTCTCTGGTGCATCAGCGGTGGTCCTCCAAGAAGATCCAGGTGGTTGTTGCCACTGTGGCTTTTGGGATGGGCATTGACAAGGCCGATGTGCGATTTGTTATCCATCACACCATCAGCAAATCTATCGAAAATTACTATCAGGAGAGTGGACGTGCAGgACGGGATGATGGCTCAGCAGATTGTATTGTATTCTTCGGGTTTGCAGACATCTTCAGAATAAGCACAATGGTGGTGATGGAGAACACAGGGCAGCAGAAGCTACAGAATATGGTAGCATATTGCCAAAATGTGGACCGGTGTCGCCGTGCTATGATGGCCATTCATTTCGATGAAGTATGGAATGATGATGAGTGCAACCAAATGTGTGATGTTTGTCGGCATGGCAACGactACATCACAATGGACATCACCAAACATGCTCGAGATGTTGTTACTATAGTAGAACTGGCCAGCTCTATGGATGAAAAGTTGACCCCTCTGAAAGTCTGTGATGCTTGGTTGGGAAAAGGGCCCGCTAAGCATCGCAAAACCATACAGGTCACGTCACTGTCACGCTTGGAGGTGGAGTCCATTATCATCCACCTTTTGTTGCATGGCTACTTCAGTGAGGACTTTAGCTTCACTCCTTACACAACCCACTTCTACTTGAAGCTGGGCCGTAAGGCAGCTCTCCTGAAGAACGCCAGTCACTCCATCACTATGAAAATGAGGAGGAGAGTGATGTCGCACTCAACTGGTGAGGCACAAGAGCAAGTTGAGACAGCCTTGCTTGATGTGTCCAACGCGGCCATTCAGAGGcataacaaaactaaaatctatAAGAATCACCAAAACATGGAGAAGAGACTTGCTCAAAACCACATTGAAAGTCTTGCTTCGGAAGCAAGCGAGTATGTAAAGCCAGCCTCAGTGTTTGAGGTTGATGTTGAGGTCAATATTGTAGAAGAACAGAGTTGTGAAAGTGAAGAAGAGAAAGGTCTTTTAAACTCCCCCGAACAGCAATCTTCACCGAAAAGGAGGCAAAACGCTGACCAGGCGAAGGCGGCTCTGGTTAGCGCTCCTTCTGAGCTCTCTATCATTTCTGCAGCTGCTGTGGAGGAGCTACACCACCTGCGCAGTTACTACAGCAAACAGTTAAGACGGATcaactacatttcccatgagCACTTGCAAAGCTCCCAGCCTGGGATGCTGACATGTATGAGAGAGCCATTCAAAAGTCTCCATTTCCCATCGAGGACAACCATAGCCAGAGGTGCAAGGAATTTATGGACTCGTGTTAGTATGAGGAGGAAACTCATACAGTGAATTATTTTGACTTTCTGTCTTCTTTTGTGcaaacttgatttttatttttttttcttttttatatatatatata

Function

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0006260 DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40440 lncRNA upstream 825 8952922 ~ 8953122 (+) True G27301
TU40250 lncRNA upstream 68802 8874717 ~ 8885145 (+) False ascl1a
TU40214 lncRNA upstream 201098 8752438 ~ 8752849 (+) True G27162
TU40170 lncRNA upstream 462009 8487986 ~ 8491938 (+) True spx
TU40166 lncRNA upstream 470133 8482896 ~ 8483814 (+) False stmp1
TU40508 lncRNA downstream 54622 9015855 ~ 9018331 (+) True washc3
TU40464 lncRNA downstream 77405 9038638 ~ 9134491 (+) False apaf1
TU40515 lncRNA downstream 92788 9054021 ~ 9057297 (+) True G27345
TU40518 lncRNA downstream 96635 9057868 ~ 9058292 (+) True G27347
TU40527 lncRNA downstream 107698 9068931 ~ 9076136 (+) True G27352
XM_043236989.1 mRNA upstream 63771 8885118 ~ 8890176 (+) True ascl1a
XM_043236991.1 mRNA upstream 63771 8885118 ~ 8890176 (+) False ascl1a
XM_043236990.1 mRNA upstream 63771 8885118 ~ 8890176 (+) False ascl1a
XM_043236992.1 mRNA upstream 63771 8885118 ~ 8890176 (+) False ascl1a
XM_043237547.1 mRNA upstream 88029 8855939 ~ 8865918 (+) False nup37
XM_043236012.1 mRNA downstream 1373 8962606 ~ 8969736 (+) True itfg2
XM_043236013.1 mRNA downstream 1374 8962607 ~ 8970594 (+) False itfg2
XM_043236014.1 mRNA downstream 1503 8962736 ~ 8969737 (+) False itfg2
XM_043237671.1 mRNA downstream 48929 9010162 ~ 9015256 (+) True cwf19l1
XM_043237138.1 mRNA downstream 54608 9015841 ~ 9018333 (+) False washc3
XR_006250548.1 other upstream 411235 8533816 ~ 8542712 (+) False etnk1
TU40115 other upstream 704724 8247912 ~ 8249223 (+) True G27079
TU40013 other upstream 815508 8137738 ~ 8138439 (+) True G26993
XR_006250729.1 other upstream 859446 8041432 ~ 8094501 (+) False col7a1l
XR_006250664.1 other upstream 1395458 7532920 ~ 7558489 (+) False ube2h
TU40537 other downstream 207543 9168776 ~ 9182232 (+) False G27360
XR_006250785.1 other downstream 420309 9381542 ~ 9394728 (+) False cfap54
TU40764 other downstream 616082 9577315 ~ 9578574 (+) True G27508
TU40736 other downstream 626086 9587319 ~ 9590318 (+) True G27490
TU40943 other downstream 1196926 10158159 ~ 10203768 (+) False G27629

Expression Profile