RNA id: XM_043237997.1


Basic Information

Item Value
RNA id XM_043237997.1
length 2127
RNA type mRNA
GC content 0.49
exon number 13
gene id pyroxd1
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13674271 ~ 13679088 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAACGCTCTCCGTAGTCCGCCGAAAAAGGTAAACACGGAAGTCCAATGACTAAATATAGCGTGGATGAGATTGCTCTTACTGCGCGTCTTTTTAGTGATTCGCTTGAGTATAAATATCGACTAAGcgtaaaaacagacaaacagctATTTTATTAAGTGTGCTGAAGTTCAATGGCTTCAGTTAAGCGAGTCGCGTTCGTGGTCGTCGGCGGAGGAATCGCCGGGGTAACTTGCGCCGAACAGATCGCGTCGCAGCTCTCATCGGACGAGGTTTACCTTCTGACCGCATCGCCCTTAGTAAAGACGGTTACAAATTTCAAACAGGTGTCGAAGACGTTGGAAGAGTTTGAAGTCGAGGAACAGCCGTCCAGCGTTTTAGAAGAAAAGCACCCCAACTTGAAAGTCCTGCGGTCCGCAGTCAGACTCCTGCGAGCTGAAGAGCACCTTTTGCTAGCGGAGAACGGCCAGACGTTCCGTTACAAAAAGCTGTGCATCTGCAGCGGAGCCAAACCCAAGCTTCTCGCCCGGGGTGACCCTCGTGTGCTGGGCATTCGAGACACGGACAGCGCTCGGGAGTTTCAAAAGCGGTTGTCGAAGGCTAAAAGGATAGTTGTCGTTGGCAATGGAGGAATCGCATTAGAATTGGTGTACGAAGTCGAAGGCTGTGAAGTGATCTGGGCTGTAAAGGACAAAGCCATAGGAAACACGTTCTTCGGCGGAGCTGCTCAGTTTCTCATTCCCTCACTGGAGGCTGACCAAAAAGAAAGATCTTTGCCATGCAAGAGAGCACGCTACACGACGGACAAGACTGGAGCAGGCCACAGCGGGGCTTCAGGAGAGCTTGGTAGTGCCTTGGGTCCAGATTGGCACGAAGGGATTGAACTAAGAGGAACAGTGCAGAATTCCAGTGGAGTTCATATAGAATATGAGTGCGAGGTTGACAGGATCTACACCCAACAAGAGTTTGCGGAGTCTAAGCCCGACACACAGAATTCGGAATTagggttGTGGCCGGCGTATGTTCGGTTAACCAATGGGAAGATCTATGGCTGTGATTTCGTTGTCAGTGCAACAGGCGTCGTCCCAAACACTGAGCCTTTTCTCAGTGGCAACAATTTTGAATTGGCGGGAGATGGTGGTCTGAGAGTGGACGATCACATGCGGACGTCTGAGCAGGATGTGTATGCGGCTGGAGATGTGTGTTCTGCTGGCTGGGAGCCCAGCGCTCTCTGGCAACAGATGCGACTGTGGACTCAAGCGCGTCAGATGGGCTGGTACGCGGCGCGCTGCATGGCCGCGGATGTGCTGGAGAAGCCTATAGAGCTGGACTTCTGCTTCGAGCTCTTTTCACACATCACCAGATTCTTCAACTACAAGGTGGTTTTGCTAGGGAAGTATAACGCTCAGGGATTGGGTCAGGACCATGAGCTTCTTGTGCGCTGTACAAAAGGCCAGGAATACGTGAAGGTGGTCCTGACCGGGGGCCGAATGGTGGGAGCCGTTCTTATCGGAGAGACGGACCTGGAAGAAACGTTCGAGAACCTCATTCTCAACCAAATGGACTTATCCCGATACGGCGCGGAGCTTCTTAATCCTAATATTGACATCGAAGACTACTTCGACTGAATCGTTCTGGTCAGTCAGCGACAAAGAAGacgattcatttattttttaaagccgCACCACGTAatttatgttcaaaaataatcatttcttTCAATCACCAATCGTACGCTGGCATTGCTCGGTAACAAGAAGTCCCACCTTTGAGGCGACGCTGTCATGCTGAGAAGGCAAATAAACCCATTGcgatttttgtttgaaaaataagCACTTCCTGTTACCTGAAAAGGCATTTTGGGATCAACATCCTCCCAGTGTGCCGGAAGGAGAATTCTCATCACATTTGCATCTGTTACGCAAAACGTATGCAAGGttggtttctctttctctgtttgatTAAAAAGGGTTAGACATTAAGGGTTAGACATCTAGGGTTAGACATTAAATCAACTCTCTCAACTCATTAACTCAACCTTGTAGTACCAGTACCATGGTGTGTCTGTGTCCACATATTCAACTTCTGAACCAGACATCAGAGAAGAAGAATTTTAGCTGAAAACTCAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K24426 PYROXD1; pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42147 lncRNA downstream 61500 13610216 ~ 13612771 (-) True G28434
TU42096 lncRNA downstream 241568 13428164 ~ 13432703 (-) False G28397
TU42094 lncRNA downstream 241602 13428028 ~ 13432669 (-) True G28397
XR_006250599.1 lncRNA downstream 330014 13343726 ~ 13344257 (-) True LOC122342564
TU42067 lncRNA downstream 354523 13311873 ~ 13319748 (-) True G28377
TU42310 lncRNA upstream 141608 13820696 ~ 13827052 (-) True G28545
TU42337 lncRNA upstream 187689 13866777 ~ 13867298 (-) True G28564
TU42309 lncRNA upstream 190334 13869422 ~ 13870614 (-) True G28544
TU42341 lncRNA upstream 200943 13880031 ~ 13880847 (-) True G28568
TU42346 lncRNA upstream 202217 13881305 ~ 13882012 (-) True G28569
XM_043237995.1 mRNA downstream 9134 13652525 ~ 13665137 (-) True LOC122343493
XM_043237996.1 mRNA downstream 26222 13635613 ~ 13648049 (-) True slc6a1l
XM_043237931.1 mRNA downstream 160867 13502936 ~ 13513404 (-) False b4galnt3a
XM_043237932.1 mRNA downstream 162034 13502936 ~ 13512237 (-) True b4galnt3a
XM_043236773.1 mRNA downstream 179844 13484786 ~ 13494427 (-) True st8sia1
XM_043237707.1 mRNA upstream 4137 13683225 ~ 13687640 (-) True LOC122343316
XM_043237836.1 mRNA upstream 13383 13692471 ~ 13698715 (-) True LOC122343399
XM_043237835.1 mRNA upstream 23295 13702383 ~ 13708079 (-) True LOC122343398
XM_043236233.1 mRNA upstream 29704 13708792 ~ 13717223 (-) False slco1e1
XM_043236234.1 mRNA upstream 29704 13708792 ~ 13717095 (-) True slco1e1
TU42098 other downstream 251732 13411624 ~ 13422539 (-) False G28397
XR_006250598.1 other downstream 312333 13316932 ~ 13361938 (-) False tmcc3
XR_006250597.1 other downstream 312333 13316932 ~ 13361938 (-) False tmcc3
XR_006250596.1 other downstream 312333 13324525 ~ 13361938 (-) False tmcc3
TU41786 other downstream 1185115 12482102 ~ 12489156 (-) False cpm
XR_006250767.1 other upstream 13857 13692945 ~ 13698715 (-) False LOC122343399
XR_006250766.1 other upstream 14092 13693180 ~ 13698715 (-) False LOC122343399
XR_006250741.1 other upstream 136486 13815574 ~ 13831851 (-) True LOC122343280
TU42363 other upstream 296269 13975357 ~ 13980559 (-) True G28575
TU42429 other upstream 490334 14169422 ~ 14176725 (-) False cerk

Expression Profile