RNA id: XM_043238011.1


Basic Information

Item Value
RNA id XM_043238011.1
length 1856
RNA type mRNA
GC content 0.57
exon number 4
gene id LOC122343505
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 12413786 ~ 12430886 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagagagagagagagagagagagccggGGATGAGGATGGAGGCAGAAATGAACAGAGCGAAGAGATATGCTCAACACTCTCGCGATTGATCAGGAGGCAGGTGCTGGGTGGACGCGCGGTGGGACCCGACAAGCTCCAGCATCTGACCAAACGAACTTCTGATTCGCGCCAGTCCGGTCTCGACGTCATCGATCGTCGGTTCTTCTTTCGTTCTCTTCGAAGCTTTGCGCGTTTCCGCGGGATCTCCGCCGACTCCGTCGCCTTTAAATCGGTCCTCCGGCTCATTCGCCGCAGTTTGAAGCTGCACCGCGCGGAAGGAGGCTGATCATGAATGTAAAACACATCAGGTCCGTCGTATAATGGGCATCGAGGACGCGAGCATGAGGAACGGACGGGCTCTGTCCGATCAGTGGGCCGACAGCGTGGTGGTCCGGCCCCGGACGACCGAGCAGCACATCACGGTGAACAAGAGGCTCGTGCTGGGCTTCGCCATCTCCATCCTCACCCTCATCGTCGTCACGGCCATCGCCATAACGCTGAGCGTCAGCTTCGAGAGATGCGCCGCGGAGAGCAGCGGGGCTCTGGCCGCGAACGGCTCCAGCAACAGCAAGTGGAAACAGTCCCGGGACGCTAACATCAGTCACAGAGACTCGGAGGACGGCCAGCAGCCCTGGAGACACCTGCGCTTACCGGCCACCCTGCGCCCGCGCCACTACGACCTCCGCCTGACCGCGTCCATGGAGAACTTCACCTTCTCCGGGGAGGTGCGCGTCGAGTTTGAGTGCGTTCAGTCCACGAAGCTGATCGTGCTGCACGCGGACCGGCTGGAGGTGGACAAGGTGCTGGTGTACTCGGACAGCAAGAAAGCGGGCGCCATGAGGATCCAGCGCCGCTTCCACTACCAGCCCAAGCAGGTGTATGTGATCGCGCTGCACAGAGAGATGAAGCCCCTCAGAACATACAAGATCAACATCACTTTCCACGCGCACATCGAGCACGAGCTCCTGGGCTTCTTCCGCAGCTCCTATGTGCTGAACGGAGAAAGAAGGTTTCTGGCGGTGACGCAGTTCTCCCCGACTCACGCTAGAAAGGCTTTCCCGTGTTTCGACGAGCCCATCTACAAAGCCACGTTCAGAGTGAGTCTGAAACACGAGAGCTCGTATCAGTCGCTCTCTAACATGCCGGTGGAGGCCTCGACGTCTGACGAGGACGGATGGGTGACCAGCCACTTCTCCAGGACGCCCCGCATGTCCACGTACTACCTGGCCTGGGCCGTGTGCAACTTCACCTACAGAGAAGCAGTTACAGACAGTGGAGTTGTGATTCGGCTGTACGCCAGGCCTGACGCCATCCAGAGCGGATCGGGGGACTACGCTCTGCACATCACCAAGAGACTCCTTCAGTTTTACCAGGATTACTTCAAAGTCAAATATTCCCTCCCTAAATTAGGCCGAAGGCGATGTCACAGACCCTGCGTCTCTTCATCTATCAGCCTCTTTCTGAAACCTACAGCCCTCTGGTCTCCATCGATTCTGCCCATCATTTCTGCTCGCCTCCTGCTGAGACTCGAACCTGAAGCTGGGGCAGAGATGGAGATTCAGAACAGCGAGGAGGAACTCTGCTGTTTCCTTTCAGGAGATTAAAAGGGAAGTTTGCTGATGGTTGAGGGATGCAGACATCAGATTATACTGAAAAAATACAGCAGGGGAACACGGCTGTGATGTTTCTGGCAGCTTGTGATGTCAGCTGAGTTTGGTGTCCCGTGTAATCTTTTCCCCAGTGTGAGCGGCGTTTCTTTTCCCCCATAATCCTCAGCTACGGCTAGGACTGATATATTCTGGCTGTACTGCAGGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41701 lncRNA downstream 145046 12265665 ~ 12268740 (-) True G28130
XR_006250651.1 lncRNA downstream 175649 12236645 ~ 12238137 (-) True LOC122342788
TU41684 lncRNA downstream 258535 12148132 ~ 12155251 (-) True G28117
TU41640 lncRNA downstream 394785 12018609 ~ 12019001 (-) True G28086
TU41644 lncRNA downstream 416483 11997013 ~ 11997303 (-) True G28090
XR_006250594.1 lncRNA upstream 557821 12988707 ~ 13071520 (-) True LOC122342546
TU41980 lncRNA upstream 557990 12988876 ~ 13071153 (-) False LOC122342546
XR_006250593.1 lncRNA upstream 591237 13022123 ~ 13071520 (-) False LOC122342546
TU42001 lncRNA upstream 746075 13176961 ~ 13177984 (-) False tmem110l
TU42027 lncRNA upstream 796814 13227700 ~ 13227947 (-) True G28349
XM_043238010.1 mRNA downstream 42616 12279641 ~ 12371170 (-) True LOC122343504
XM_043236853.1 mRNA downstream 417147 11846594 ~ 11996639 (-) False magi2a
XM_043236850.1 mRNA downstream 417150 11841965 ~ 11996636 (-) False magi2a
XM_043236767.1 mRNA upstream 34726 12465612 ~ 12489181 (-) True cpm
XM_043236805.1 mRNA upstream 61468 12492354 ~ 12536326 (-) False usp6nl
XM_043236801.1 mRNA upstream 61468 12492354 ~ 12536324 (-) False usp6nl
XM_043236804.1 mRNA upstream 61468 12492354 ~ 12536322 (-) False usp6nl
XM_043236802.1 mRNA upstream 61468 12492354 ~ 12522764 (-) True usp6nl
TU41650 other downstream 398019 12014631 ~ 12015767 (-) True G28093
XR_006250735.1 other downstream 867974 11426497 ~ 11545812 (-) False ppfia2
TU41528 other downstream 989703 11422069 ~ 11424083 (-) False ppfia2
XR_006250794.1 other downstream 2050220 10358424 ~ 10363566 (-) True zgc:193726
TU40990 other downstream 2056581 10355711 ~ 10357205 (-) False zgc:193726
TU41785 other upstream 51034 12481920 ~ 12489156 (-) False cpm
TU41786 other upstream 51216 12482102 ~ 12489156 (-) False cpm
XR_006250598.1 other upstream 886046 13316932 ~ 13361938 (-) False tmcc3
XR_006250597.1 other upstream 886046 13316932 ~ 13361938 (-) False tmcc3
XR_006250596.1 other upstream 893639 13324525 ~ 13361938 (-) False tmcc3

Expression Profile