RNA id: XM_043238021.1


Basic Information

Item Value
RNA id XM_043238021.1
length 2891
RNA type mRNA
GC content 0.48
exon number 15
gene id cdhr5-rs
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 10275513 ~ 10290873 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTGTTGCGCCGTGGCTGGCCGCTGTCCCTTGTGGAGCAGGTTTGAGCCCCTCTCGGAGGAGAGTCATGCGGCGAAGGACAGGAGCGGCCACCGCGGGAAGCCACGGCAGGATCCCCTGAGCTCTGAAACAAAGGATAACGGCCACCGGAACAACGCGGGGACAAGGAGACGTGAGCCCGGGGGAATATCAACCATGTTGACGCCATGGAGATTGTTCCTCTGCCAGATGGCACTGAACGTATTCTATCACATCGCGAAAGCCAGTTTATGCCTCGGTGGTCAAGACATATTTGCCACGGTCCGAGAGAACAGTCCCACTGGAGAGATCATAGCCAACCTCAGTATCAACGGAGACCCCGGAGCCAATAGCATCCGCCTGTGTCTCACAGGAGAAAACGCTGACTGGTTTTACCTCGAAGGCCGAACGATCCGACTCAACTCGTCGTTTTCAAAGACCTTGGATCGAGAGGTGCTGGGATCAGTTCTGATTGCTGCATTGACGTGTTATGAAAATGATATAATTAGGAGTCGATATCGAATTATGGTGGAAATACTGAACGAAAATGACAATATGCCATACTTCCTTGAAGATACCATTCAACCGCGATATATAAGTGAGTTGCTAACTGTAAACTCAATGGTGTTCACAGTAAAAGCTAGAGACGTCGATGGAGACACAATCACTTACATGACCGACAAATCCACAGCCGATGCCAGCTATTTTAGGATTGATCTGCCCAACAGTGGGATGGTGATCCTGGATAAACCGTTAGACTACGAGACTAAAACCCAGCTGCAGGTGGTCATATTTGCTGTGGAAACGACCACAAAAGAGAAGTACAGCACGACAGCTACCGTCACCGTGAACGTTCTAGACGGAGATGACCAGTATCCTCAGTTTCAGCCATGCGCCCCTGTTTATGAAGACGGAGATCACAATATCTGCACCAACCCTGTGTACAGTGTCAACATCACAGAGACAGATGAGGATgctgtgctttatttttctccGGGGCCCATTCATGCCGAAGACGGAGACAAAGACATATTGACTCCTCTAGTCTACAGTATTCTGTCAGGTGACGACGATGGCAGATTTACAATCGACTCTAAGACCGCAGAGATCTCTCTCAGGCGACGTGTGGAAAACAGACTCCTCACGCCTTCATTCAGGCTCCGCATCATGGCTTCGCAGGTGAATGACCTGAAGAAATATTCGGTGGCGACCGCACTGGTGCACGTGGTGTCGGAGAACCTGTTTCCCCCGTTCTTCAACAAGACCGTCTACAAAGGGTTCCTCATCGAGAGCTCCAGCCCTGCCACGCTGGTCACTACCTACGGGAACCAGGTCCTGGTAGTCCAGGCCATCGACAGGGACTTCAGAGATggaATAAACCCAAAAATCCATTACACGATGCAGCCCTTGACGGGTAGCAATAAACTGTACCACATCACCCAGGATGGCATCGTGATTGCGAAGACGGACCGACTCAGAGCGTTCGACCGACACATCCTGGAGgTGATTGCAACAGATGAAGAGTCCGGTGAGACAGCCCATGCTTCAGTGGATATTGAAGTGCTGCAGAGAGGACAACCAGTTCCCAGAAGTCCATTTGGTGAGGAACGTCTGTTTGGAGATATGAACGCAGGGATGGCCGGCGGCATCGCTGCCCTCGTTCTGATAGCGGCCGTGACAGTACTGTTTCTCTTCCTCTGGCTGGCcaagagacggagagagagacgggaTCCAGCAGACAGGGGCGCAGTAGCTCTTGGGAAGCACCCAAACGTGGTCAATTCAGGACGTCCCATATCGCTCATAGAGGACGCCTCCTACCACAACGAGGCATTCGTTGACCACGAATACCCCAGTGACTTATACACCAAAACAGACGACATGTTTTCTGCCTCAATCAGGGCACATGAGTCTGAAAGGCCCACTGTGCCGCAAGACATGCTGCCCATCCTGGTGCTTCCAGAAATAACGCCCCCAAACCCCTCGTCTTCAGCTCTGGCCAATGGGAAAGCGTTTGTAAAATCGGTCTCTTTTAAAGAGGACGTAGGAGCAGCAGAGGAGgctttacccaaaaatgaaggaCAACTCGTAGTTGTTTGTAACCAAATAGAAACCAGAGCGGATATTCTGATGCCCGTCACGCAGCAGGACACTTTTGCTGTAGCCACAGCAGAAAATCCCGCAGAAAAGGTTGACGTTTGTCGCCCAAATCCTTCTGTAAGGCCCAGAGAGGAATGCATCTTCGCGCACGGTAATGAGGATGACGGAGATGACAACGATCCGTACAAGAACATGGCCTCGGTTAATTTACAGCAGTGACGAAGACACCGGAGACGATGAGCCAAATGATTTAAGGCACTATTTCAAACACGGGCAAAATCAATTCACGGTTGACCACATGAAGGCCATCGGATTACAAATCGAGGATTCGGATGAATCGCAAGCCTGATTCATCCCAAAGCCAAATGCTTACGAGTTTAAACAAAGGGAAAATAGCAAAGAAcaacaacgacaaaaaaaacaggctcATTAAATAGGATATAAATACGTATTATCAAACTTTACAGCTTTTCAGTTTTTGGTTTATATTCCATGTCGAACTGGTCCAGAAATACAGTGCACATGATCAGCCTTAATTAAGAATCAGTTTAAAGGACGTTTTGATGACTGCGTCTTTGAGAAATTAAGATCTTGTGGTCtgcttttgaatttttcatCCAGCTCTCGTGTATTTTTAAGACATCTTGACCGGAAATCGAGGTCAAACCCTGAAAGTGTGTATTGTAatgaaatgattgtttttttctaGACTACGATGTTCTGACGTTCTGACTGTAATTTTACACTTAgcattgaaataataaataaaagttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40941 lncRNA downstream 139635 10083419 ~ 10138056 (-) True G27628
TU40939 lncRNA downstream 261937 10015182 ~ 10015754 (-) True G27627
TU40887 lncRNA downstream 532904 9697696 ~ 9744787 (-) True G27581
TU40835 lncRNA downstream 623314 9597457 ~ 9654377 (-) False G27549
XR_006250795.1 lncRNA upstream 31861 10322734 ~ 10349291 (-) True LOC122343524
TU41330 lncRNA upstream 98574 10389447 ~ 10389805 (-) True G27883
TU41345 lncRNA upstream 155562 10446435 ~ 10507553 (-) False G27894
TU41344 lncRNA upstream 193383 10484256 ~ 10507553 (-) False G27894
TU41360 lncRNA upstream 194049 10484922 ~ 10486071 (-) False cacna2d4a
XM_043238014.1 mRNA downstream 13345 10201993 ~ 10264346 (-) False cacna2d1a
XM_043238013.1 mRNA downstream 13345 10201993 ~ 10264346 (-) True cacna2d1a
XM_043238024.1 mRNA downstream 91614 10168183 ~ 10186077 (-) False hgfa
XM_043238023.1 mRNA downstream 91619 10166516 ~ 10186072 (-) True hgfa
XM_043238015.1 mRNA downstream 119992 10016446 ~ 10157699 (-) True snd1
XM_043238027.1 mRNA upstream 10469 10301342 ~ 10320173 (-) True drd4-rs
XM_043238033.1 mRNA upstream 64838 10355711 ~ 10360398 (-) False zgc:193726
XM_043238034.1 mRNA upstream 64838 10355711 ~ 10357169 (-) False zgc:193726
XM_043238031.1 mRNA upstream 67551 10358424 ~ 10360391 (-) False zgc:193726
XM_043238030.1 mRNA upstream 73232 10364105 ~ 10365584 (-) True atp6v1f
XR_006250565.1 other downstream 977512 9271972 ~ 9300179 (-) False uhrf1bp1l
XR_006250745.1 other downstream 1268387 9004260 ~ 9009304 (-) False klhl42
XR_006250786.1 other downstream 1336420 8894184 ~ 8941271 (-) False LOC122343470
TU40990 other upstream 64838 10355711 ~ 10357205 (-) False zgc:193726
XR_006250794.1 other upstream 67551 10358424 ~ 10363566 (-) True zgc:193726
TU41528 other upstream 1131196 11422069 ~ 11424083 (-) False ppfia2
XR_006250735.1 other upstream 1135624 11426497 ~ 11545812 (-) False ppfia2
TU41650 other upstream 1723758 12014631 ~ 12015767 (-) True G28093

Expression Profile