RNA id: XM_043238038.1


Basic Information

Item Value
RNA id XM_043238038.1
length 1390
RNA type mRNA
GC content 0.42
exon number 10
gene id usp18
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1990505 ~ 1993588 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgaaagtaaaaacagCTGTTTCTGTTGATTTCTTTTCGAAACTGTTATGTTTCGAGTAAAACGGGAGCTTAAGTGTCTTGAAGAGGATCGATATTTCGTCAGCTTAGTTTGATTTTCTATAACCAATACGCAGATTAATGGTAGGTTTCCATAGATGCAACACTGAGAAACGTTTGCCGTCGTGTATGTCTCTGGATGGGGAGGTATTGCAGTAAAATGGCTTATCGATTTTACAGCGGCTCTGGATCACTGGGTTATGAAGTAAGGGGCCTTTTAAACTACAATCTGTCCTGCTGTACCAATGCTTTGCTTCAGTCGTTTTCTGCGACCACTGAACTCCTGGACATACTGAACAAATGGCATCCATCAGATGAGACTGATGAGAGGAACGTCCTGCTGCAGTTGAAGAACGCCCTGGAAGCCATGAGGGACAAATCACATCCTGCTCCACACAAAGACTTCCTCAAATGCCTCTACTATCAAGCCGTCCGACCAAGCACTCAACAAGATGCAGATGAAATATTCCACATCATCCTCAATCTCAGTCAGAAGCAGATGCCTGATGCTGCTGTGGCTCAGGAAATTCGCAGTCTCTTTGAGATTCAGGTAGAAAACCAGGTGGTGTGTTCAGAGTGCACATACATTCACAGAGCACCCAGCTCTCTTTTCAGCCTTCCTTTGGCAATCTTCGAAAGAGACACTCTGGAAAGCTGCATCAAATCTTTTTTCATGCTGCAAGAGCTGCCCGACAGCGAGAAGGCTTACTGTGACCGGTGTGCTGAAAAGCGGCCGTCAACTCAtgAAGCTGATTACGTCAAGACTAATGAGTATTACAGTCTCTATGCCGTAATAGTGCATGAAGGACACATGTTTGGACACTACACTGCTTTCATCAGATCGAATCAGGAGGAGATGTGGTATTATGCTGACGACTGCCGCGTGCGGCCATCCACATGGGCAGATGTGCAGGACACATATGGAGGGTCCCATCAGTATGGAAGCACAGCCTACTTGCTTCTGTACAGGAAGAAGAGCAGGAATTTGTCTGCGTAATTCTTGGGAACGCGGCAGCACTTGATCGACACTATATGACATAATACAGAGAATATTCCAAGAACAGGACtaaaatgtagttatattttTGGGATAAGTATAtgaagaaatcatatttttaagaaGGTTAATCAGTAAATTTTGGGGTTTATGTAGGACAGTATTTTGGATaggattttgttattttgtcagAATGTTTTCTGTAATCTAtggatattattaaataaaaaatactagttttgaaataatcagaatcaactttattgccaggtatgtttacacatacgaggaatttgttttagtaacagaagctctacagtgcaacaggaTAACAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37451 lncRNA upstream 81578 1907200 ~ 1908927 (+) True G25193
TU37447 lncRNA upstream 84399 1905830 ~ 1906106 (+) True G25192
XR_006250555.1 lncRNA upstream 88619 1899896 ~ 1901886 (+) True LOC122342405
TU37306 lncRNA upstream 159537 1830678 ~ 1830968 (+) True G25086
TU37231 lncRNA upstream 201229 1788631 ~ 1789276 (+) True G25030
TU37517 lncRNA downstream 720 1994308 ~ 1995523 (+) False lyrm5a
XR_006250654.1 lncRNA downstream 35208 2028796 ~ 2033049 (+) True LOC122342875
TU37535 lncRNA downstream 35216 2028804 ~ 2032064 (+) False LOC122342875
TU37531 lncRNA downstream 55636 2049224 ~ 2050952 (+) True G25249
TU37589 lncRNA downstream 113175 2106763 ~ 2107094 (+) True G25288
XM_043237920.1 mRNA upstream 568 1987476 ~ 1989937 (+) True pex26
XM_043237921.1 mRNA upstream 3331 1985568 ~ 1987174 (+) True rhno1
XM_043236894.1 mRNA upstream 11215 1973274 ~ 1979290 (+) False si:ch73-352p4.8
XM_043236224.1 mRNA downstream 652 1994240 ~ 1995536 (+) True lyrm5a
XM_043237015.1 mRNA downstream 7501 2001089 ~ 2022310 (+) True utp20
XM_043237924.1 mRNA downstream 184944 2178532 ~ 2189748 (+) False LOC122343453
XM_043237923.1 mRNA downstream 184945 2178533 ~ 2189748 (+) True LOC122343453
XM_043237518.1 mRNA downstream 395391 2388979 ~ 2394441 (+) True ifrd1
TU37230 other upstream 202409 1784292 ~ 1788096 (+) True LOC122342451
TU37269 other upstream 317546 1670512 ~ 1672959 (+) True LOC122343488
TU37077 other upstream 699281 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 1324975 654092 ~ 665530 (+) True G24771
TU36683 other upstream 1616423 373527 ~ 374082 (+) True G24632
TU37871 other downstream 1121920 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1125941 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 1445543 3439131 ~ 3439654 (+) True LOC122342808
unassigned_transcript_299 other downstream 1447324 3440912 ~ 3441500 (+) True LOC122342809
unassigned_transcript_300 other downstream 1453470 3447058 ~ 3447574 (+) True LOC122343393

Expression Profile