RNA id: XM_043238039.1


Basic Information

Item Value
RNA id XM_043238039.1
length 2422
RNA type mRNA
GC content 0.44
exon number 7
gene id si:dkey-39a18.1
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 6656669 ~ 6662354 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCCAGAGTAAAGTCTCTGCGCTGACAAATGTCTGTATTTTGAGGCGGTTTCTCAGAACTGGAGCGCCATTATGGAGTGCTTGTTGATTTAAGGTGGATGAAAGGTTTTTAGGGCATGTCATGAGCTCATTCTGTGGTCAGGGTTGTTCTCAACTCTCTGTGGGGTCCAGGGACACAACCACCCAATCAGCAGCTGAGAGCGTTGTTGTCTTGGATTTTGACTGGTCTATTAAGGTGGTCATGGTAATGTCCTGATTTCAGTAGTTTGCACTGTCCTCAGTTTGAGCCACTGTCCTAGCCTTTCCACTGAGCCGTCTTGATATTCTGCATCTCTGTGgGTAAATAAGAATCGAGATGGGCTTTTTTATGGATGCAAATGGAGACTGGCCCtccaaaaaaatcaagaaaaacagAAGTCAGTCCCCTTTTCGTGATGTGTCACCTGTACCATCGCATTTCTCAGAACCAGCCTCATTCCTGCAACACAGGGATGTAATTGTCAGTCTTCCGTGTCTCCCCGATGTAAAGGGGCCACTCAGGGATGAAGATGACGACGATGATGTTCGGAGTCATAAGAGCTTGCCAGCGGTAACTGGACAAACCCTCCAACACAGAGACAAGAAGTCATACAGACATTCTGGAAAGCACAACATAACTGGCTTACCTCCCATCATAACCACCAGGTGCAGTCTGATTGTGAAAGGCACTGGATATAAAACTGTCCCCAAACTCCCACCAATCGCAAAATCCAGGAATACTCGGAAGCAAATAGACCCCCCAAGACCACCTTGTAGATTTGGAAGCAGGCCAGACAAAATGGAATTCAGTTCCACTAAACCTGTTCATGCATTGATGCATCCAAAAATTCTACCTGTCGGGCAGACGTCTCTCTCTTTCAAGGTGCATAGCGTTCAAGGAAACGGGCCCTGCTTGCTTTCTGCCAATGCCTCTGGAGTGTCCCCGAGATCTCGACTCACTTTCCAAAGTCCTGTAGTGCAGGCAGTGTACCCTATCAGTCCTGACACCATACAACAGATGAGGCAGACTGACAGAGCGTGCCAGCCCCTGAGGTCTGTGCTGAAAAAAGCACCAAATGGAGGAGTATTTGACTGCCCACTGGCGGCCCACCTGCTGGAGCCATTTTCTGGGTTTCAGGAGCATTTGTGCCGCCAGATCCTACATTCTCCACTGCCTTATCGTGCAGCTCTTCCGCAGGTCCACTTTCCTTGTCTCCAGGACCAGGAGGATCTGTTGCCTGCATACAGGGGCCCATACGGTTCCCTGATGGAGCGCACCGTGGAGCTGTGCAACTCCCAAGGACAGAAGCTTCCCAAAATCACCATGACTTGCCCGACTCCTTCTCCGAAATATTTGAGCCGTACAGAATTTCAGCATGCGGCTTAAAGGAATAACCAAGAATAACCAAGTAATCTGACAAGCTTAAAGGaacttttaacaaaattaatatcGCTCTGGGCACAAAGGATTACAAAAAGATCACCAAAGTTCACCGAGATCACCAATTCATTTTGTTCAGAGACAATAAATAAGCCAAAACAGACATCTGTGCAGTCTCTTGGCGCTTTTCTTGATTGCGTAGTGATTATTGAACTCGCGGTCATAATGTTCTCCTGTGCACAACTCAAGTTATTGCTGGATAACCAATCATCTTTCATCTGGTTGCCATGGAAGCTCTAAGGATCATTAAACTGTTGGAACTTTACCCTGGGGGCTGCACTGTTCCACAGGTACAGGAAGTGCCTCTGAGGAGCATTAAAAAGTCATGCTGTACAATTTTCTGGGTGTTAAGATCCCAGGGAAGGAATCATAAAGGAATCATAGTCTGCCTTACTGAGgaagaatgtaatattttttctttcttccactttactttttaaaatcaatacaatATTCTCAGTTGACAAGAATCTACAATGTGATAGGGGGCCAAGagcagtttttacattttgcatcatTGCCTAGTGCAGATGTATCTTTTGGGATAAGTATCTTTGCTAGAAGTAACAGTACCGTTAATAGACCTATGACAGAGTAATATTGACTTCTTCAGGATGTGGTGGTTGGGGTTTATTGCAACATTTGAAAAGTACTGTTGTACATCAGTGtaattcatctatcatttcctctgatttaatgcattactcatgggtaaggtaaAGTTTAGGTgcagagatatggtcaagactacaattttggattaaaatgttgttccaacACATCGAACTCTGCAAAATCAGGACGTGCCTTGTCCAACCCTTCCATTATTTACCGTGTAAACCTGCCATGTCAGTTCTAACCAGAACTATTAtacctttaatgttttaattttatttagactAGTACTGTTGAGGAGGAGAGTACGTAAGGGATTTCTAATAATTAAAGGAATATGGGAACTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39419 lncRNA upstream 252270 6399167 ~ 6404399 (+) True G26585
TU39344 lncRNA upstream 358589 6296133 ~ 6298080 (+) True G26517
TU39345 lncRNA upstream 358749 6216841 ~ 6297920 (+) False G26517
XR_006250600.1 lncRNA downstream 322889 6985243 ~ 7013661 (+) True LOC122342579
XR_006250775.1 lncRNA downstream 395070 7057424 ~ 7061042 (+) True LOC122343425
TU39534 lncRNA downstream 420946 7083300 ~ 7088359 (+) True G26669
TU39562 lncRNA downstream 525586 7187940 ~ 7227437 (+) False G26692
TU39831 lncRNA downstream 751582 7413936 ~ 7463373 (+) False akr1b1.1
XM_043236715.1 mRNA upstream 2016 6641863 ~ 6654653 (+) True cand1
XM_043237105.1 mRNA upstream 266642 6388543 ~ 6390027 (+) False vhll
XM_043237103.1 mRNA upstream 273406 6372058 ~ 6383263 (+) True wif1
XM_043236372.1 mRNA upstream 421731 6196591 ~ 6234938 (+) False lmo3
XM_043236780.1 mRNA downstream 9332 6671686 ~ 6688935 (+) False dyrk2
XM_043236776.1 mRNA downstream 14370 6676724 ~ 6688935 (+) False dyrk2
XM_043236778.1 mRNA downstream 17247 6679601 ~ 6688935 (+) True dyrk2
XM_043236777.1 mRNA downstream 17247 6679601 ~ 6688935 (+) False dyrk2
XM_043237517.1 mRNA downstream 88162 6750516 ~ 6755031 (+) False calua
TU39399 other upstream 265742 6388837 ~ 6390927 (+) True vhll
TU39185 other upstream 758898 5892985 ~ 5897771 (+) False LOC122342837
TU39144 other upstream 803288 5781944 ~ 5853381 (+) False LOC122342465
TU39141 other upstream 803288 5850429 ~ 5853381 (+) False LOC122342465
unassigned_transcript_304 other upstream 1257702 5398880 ~ 5398967 (+) True trnay-gua_2
TU39561 other downstream 563167 7225521 ~ 7227437 (+) True G26692
XR_006250877.1 other downstream 707781 7370135 ~ 7370275 (+) True LOC122343893
XR_006250876.1 other downstream 711500 7373854 ~ 7373994 (+) True LOC122343892
XR_006250663.1 other downstream 870566 7532920 ~ 7558489 (+) False ube2h
XR_006250662.1 other downstream 870566 7532920 ~ 7558489 (+) False ube2h

Expression Profile