RNA id: XR_006250552.1


Basic Information

Item Value
RNA id XR_006250552.1
length 902
lncRNA type inter_gene
GC content 0.55
exon number 6
gene id LOC122342395
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2686424 ~ 2719361 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGTGACCCTAGATGCCCAGGGAGATCCTgccgccacacacacacagtcacagcGGCTCTCGCCAGCGTGACTGAAGCGCCCTGCTGAGAGCTCAGATGTCAAGGCTGGGACCTCTGTAGCGGACCCCGCGGACGCACGTGACCTTCCCACGAAGTGCATTTGCCACCCGAGGAGAAGTCATGCCACGCGAGCGCCAGTTCGATTCTTGGAAAACACGCCTGAATGACGCACATCAAAATTCAATCACACACGAGCACCATCCAGGCACCCACCTCCACCCCCTTGTTGACTTGATTAAGCAGCCCAAGTTTGCATTGGTTTGCACCAAGTGCCTCAACCAAAGGTGGGGGCGGGACTATTTGTTTGTCCCGACAATGGAAACCGTAGAAATGTTGACCGAAACATTGAAGGAGGGACCCGTACTCAACTCTATGGTGTGATGTGGATTCAGTGCAGCGGTCTCCTGTTGTGTGTGAGGTGTGATAGGCACTGCACACTTCTTGAGGAGTTGAGGACAGATTGAGTTCTGTTCTGCTGAACAGCTGTCATTCCCTGCTCACTGTCAAACAACATACAGGGATGCCTGGGGTTCTGACAGCTCTACCGCCATCCACAACGTTTATTTATCTGAGGAGGGAAAGAGAGGCTGGAGTGGATGATGGTTCTCACACCTCCGGCTCAGCGTTGATATCTGTTCAGAGAGCGGCAGAGGGAATGAAAGAATGGAAGGAGGAGGTgcaaagaagaggaggagGTGCGCGGGCACGCTCATTAAGACGGAGGGCAGACTGGCACTGCCTCAACAAACGGGAAAACAAGTGCCGCCAGTCCAGCTCTGCGGAACCACGTCCCCACCGACGGGAACCTCTCCACGGGCCTCTCCGCTAGCCCGGGACACTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250564.1 lncRNA upstream 6681 2666342 ~ 2679743 (+) True LOC122342427
XR_006250604.1 lncRNA upstream 23379 2662114 ~ 2663045 (+) True LOC122342588
TU37667 lncRNA upstream 170033 2439459 ~ 2516391 (+) False G25346
TU37666 lncRNA upstream 215834 2439459 ~ 2470590 (+) True G25346
XR_006250753.1 lncRNA upstream 232135 2439495 ~ 2454289 (+) True LOC122343307
XR_006250772.1 lncRNA downstream 7441 2726802 ~ 2787657 (+) True LOC122343412
XR_006250771.1 lncRNA downstream 70717 2790078 ~ 2825789 (+) False LOC122343411
XR_006250770.1 lncRNA downstream 76457 2795818 ~ 2825789 (+) True LOC122343411
TU37817 lncRNA downstream 211747 2931108 ~ 2931859 (+) True G25453
TU37820 lncRNA downstream 215801 2935162 ~ 3030892 (+) True G25455
XM_043237770.1 mRNA upstream 44587 2622539 ~ 2641837 (+) True mdfic
XM_043237879.1 mRNA upstream 83923 2505946 ~ 2602501 (+) True foxp2
XM_043237878.1 mRNA upstream 83923 2538019 ~ 2602501 (+) False foxp2
XM_043237880.1 mRNA upstream 83923 2538019 ~ 2602501 (+) False foxp2
XM_043237518.1 mRNA upstream 291983 2388979 ~ 2394441 (+) True ifrd1
XM_043236336.1 mRNA downstream 127913 2847274 ~ 2862389 (+) True elk3
XM_043237665.1 mRNA downstream 188098 2907459 ~ 2908695 (+) True si:ch1073-67j19.1
XM_043236380.1 mRNA downstream 192817 2912178 ~ 2913479 (+) True LOC122342536
XM_043237682.1 mRNA downstream 196800 2916161 ~ 2920243 (+) True phyh
XM_043237080.1 mRNA downstream 203860 2923221 ~ 2927098 (+) False ucmaa
TU37230 other upstream 898328 1784292 ~ 1788096 (+) True LOC122342451
TU37269 other upstream 1013465 1670512 ~ 1672959 (+) True LOC122343488
TU37077 other upstream 1395200 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 2020894 654092 ~ 665530 (+) True G24771
TU36683 other upstream 2312342 373527 ~ 374082 (+) True G24632
TU37871 other downstream 396147 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 400168 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 719770 3439131 ~ 3439654 (+) True LOC122342808
unassigned_transcript_299 other downstream 721551 3440912 ~ 3441500 (+) True LOC122342809
unassigned_transcript_300 other downstream 727697 3447058 ~ 3447574 (+) True LOC122343393

Expression Profile