RNA id: XR_006250555.1


Basic Information

Item Value
RNA id XR_006250555.1
length 923
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC122342405
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1899896 ~ 1901886 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTTGGTATGTTAAACAAGTCAGATTCCATCTGGTTAAGATTCGGGATCAGCAGAACCAGATATTCCTTAAGGAACTCGATGTAAACAATCAGTAGTGGTCTGTAGCCTGTAGGCAAGCGATGGGTAATGCTTCATGAAGCGTGCTTGATGAATACCTTTCAGCAAGCTTATGTCTGACTTGAATTTGTGGGGAACGACAACAGACAAATAGTTTTCTGAATAACTGTTTTGTTAGTTCACTCCCAGCTGACAAACATGGCAGAAAGACACACCAGAATATACGAGTGGGAGATTTATCGCTGATGAAGAAACGCGTCTTCccagaaagaaaagagaacaatGGGATCATAGTTTGCAAAACAACACCCCAGATGTCTCCTTGGCTTTCGCTCGGCCTTAGGCAGCTGCCAAATCATATCTGTCATTAACCCAGGGAAATCCAGCTACAGGGATCATGGGATGCCTCGCAGAAGGATTTTTACACTCTCCTCATATTTCCCACCACTATTAAGACTTCCTAAATGCAATTTGCATGTCAGCATCAGTTTTTGGAAAGTATAGCGGTGTTAACAGGTGTTGTTCACCTTTGAATTGTAATCTAAAGCAAAAAAGGGCTCAGACTTCATTGCAAACGTTTCATTACAGGACTAGAGGGCGGGATCTGGAGACTCCCATAATACCTCCACAAACAGTATTGTGACTGGAAATAAAACCGCATCAAGAATAAATCATCATGGAGAAGGTTAACCGGTTCATGGAAGTGCAGATAGCTGTGCAGTTTCGCAGCCTCAACAGGATCTAGACCTGCAATCACGTGTAGGAATGCCGCATGCTCATTTTAGCCCCATCTGTGTCCCGTAACCCAGATGCCCCTCGCCTCACCGTGACCTCTTCCTCTGCGGCGTCGTCCCCCTCTCCCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37306 lncRNA upstream 68928 1830678 ~ 1830968 (+) True G25086
TU37231 lncRNA upstream 110620 1788631 ~ 1789276 (+) True G25030
XR_006250569.1 lncRNA upstream 112662 1784237 ~ 1787234 (+) False LOC122342451
TU37284 lncRNA upstream 206507 1688978 ~ 1693389 (+) True G25071
XR_006250791.1 lncRNA upstream 227136 1670617 ~ 1672760 (+) False LOC122343488
TU37447 lncRNA downstream 3944 1905830 ~ 1906106 (+) True G25192
TU37451 lncRNA downstream 5314 1907200 ~ 1908927 (+) True G25193
TU37517 lncRNA downstream 92422 1994308 ~ 1995523 (+) False lyrm5a
XR_006250654.1 lncRNA downstream 126910 2028796 ~ 2033049 (+) True LOC122342875
TU37535 lncRNA downstream 126918 2028804 ~ 2032064 (+) False LOC122342875
XM_043236175.1 mRNA upstream 1639 1896161 ~ 1898257 (+) True mrps18a
XM_043236337.1 mRNA upstream 74834 1823635 ~ 1825062 (+) True LOC122342504
XM_043236242.1 mRNA upstream 77146 1818023 ~ 1822750 (+) True mapk12b
XM_043237781.1 mRNA upstream 83418 1809292 ~ 1816478 (+) True mapk11
XM_043237778.1 mRNA upstream 91196 1805589 ~ 1808700 (+) True LOC122343360
XM_043236186.1 mRNA downstream 38856 1940742 ~ 1945597 (+) True pou3f2a
XM_043236898.1 mRNA downstream 58976 1960862 ~ 1965535 (+) True ngs
XM_043236894.1 mRNA downstream 71388 1973274 ~ 1979290 (+) False si:ch73-352p4.8
XM_043236896.1 mRNA downstream 71806 1973692 ~ 1979290 (+) False si:ch73-352p4.8
XM_043236895.1 mRNA downstream 71819 1973705 ~ 1979290 (+) True si:ch73-352p4.8
TU37230 other upstream 111800 1784292 ~ 1788096 (+) True LOC122342451
TU37269 other upstream 226937 1670512 ~ 1672959 (+) True LOC122343488
TU37077 other upstream 608672 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 1234366 654092 ~ 665530 (+) True G24771
TU36683 other upstream 1525814 373527 ~ 374082 (+) True G24632
TU37871 other downstream 1213622 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1217643 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 1537245 3439131 ~ 3439654 (+) True LOC122342808
unassigned_transcript_299 other downstream 1539026 3440912 ~ 3441500 (+) True LOC122342809
unassigned_transcript_300 other downstream 1545172 3447058 ~ 3447574 (+) True LOC122343393

Expression Profile