RNA id: XR_006250563.1


Basic Information

Item Value
RNA id XR_006250563.1
length 945
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id LOC122342426
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17667150 ~ 17669761 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATGCTGCTCCAGAGGGAACCTGCGAGTGCTTATCATATCAGTGTGGATGTTTGCTCAGTTAAGTAGCCTAACATAGGGTTTTTAAACCCagtttatatttgaaattattgaaAATAGTTGAGGATGATCAAAAACTGACGTtatctgtttgtgtttcatgATAAAAGCGTATCCTTCGTAGCTGCAGGAACTCTCATTTCCTTTGGAATGGGGGAAATGTCCTGCAACGATCTGCAATGCCAGGAAATATCTTTAAACGCTGGCACACTGGCACACATGGgtctgtgtttgtatattaaCCAGCATGCACTTGGAGCAACAAATCAGTGCATCCGAGTTCTGAAAAAGGAGGAAAGCGAAAAGATCTGCCGCCACCTAGTGGTGAATTTGccTTATCAACTTTTCATCAACAATGTCTTCTTTCTCGGAAATTGTGTTTTGTCCATATTTTTCTCCACACAAAGTTTTGCTCTGGAACAATGCAGATATGACCGTATAAATCCCCTTTTCCCCTAAATGGTTCAGATGTGTTAGATGATGCCGGTAATATTTTAACTTATGGGCATTTCTTGATCATCACGGCTTTCCTGCTCcgctaaaagaaaacaatacattaataaaagctATACCAGCAGGTTTATACCAATTAGTTAGAAGTCAGGTAATGTTGAGTGAAGGTAATGCGGCGTCTCCTGTTTTGTTTGGGGGTGGTAGTAACTTTTTAGACAAGAAGTGTAACAACAAACATATTCACAGGCTtcttcaagttaaaaaaaaagattactccaagtctttatatttttagcacTTTAAATAAGGTGTACAATTTTGCcctcaaaaaatattatttgttattatgaaacaccaaaacatttttcctttgaatatattgttaattttttttatgttgtatttaaaactatttccaTAAGCAAAAATGGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43359 lncRNA upstream 112960 17553833 ~ 17554190 (+) True G29272
TU43253 lncRNA upstream 281470 17385289 ~ 17385680 (+) True G29200
TU43244 lncRNA upstream 372510 17294375 ~ 17294640 (+) True G29192
TU43233 lncRNA upstream 446534 17220257 ~ 17220616 (+) True G29181
TU43230 lncRNA upstream 447636 17219142 ~ 17219514 (+) True G29178
XR_006250674.1 lncRNA downstream 40294 17710055 ~ 17711711 (+) True LOC122343158
TU43407 lncRNA downstream 68306 17738067 ~ 17739667 (+) True G29305
TU43408 lncRNA downstream 75767 17745528 ~ 17746317 (+) True G29306
TU43425 lncRNA downstream 147785 17817546 ~ 17817933 (+) True G29317
TU43456 lncRNA downstream 148385 17818146 ~ 17818416 (+) True G29331
XM_043236807.1 mRNA upstream 1253 17644435 ~ 17665897 (+) True kdr
XM_043236808.1 mRNA upstream 36328 17582070 ~ 17630822 (+) True clocka
XM_043236810.1 mRNA upstream 36328 17582070 ~ 17630822 (+) False clocka
XM_043236809.1 mRNA upstream 36328 17607074 ~ 17630822 (+) False clocka
XM_043237592.1 mRNA upstream 88346 17565453 ~ 17578804 (+) True nmu
XM_043237278.1 mRNA downstream 136079 17805840 ~ 17811463 (+) True LOC122343009
XM_043237493.1 mRNA downstream 231680 17901441 ~ 17902917 (+) True oxt
XM_043237498.1 mRNA downstream 242678 17912439 ~ 17915594 (+) True fabp1a
XM_043237496.1 mRNA downstream 242680 17912441 ~ 17915435 (+) False fabp1a
XM_043237497.1 mRNA downstream 242680 17912441 ~ 17915435 (+) False fabp1a
TU42966 other upstream 1192769 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 1681424 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 1825295 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 2011969 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 2111468 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 630654 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 766699 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 1213418 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 1620459 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 2061501 19731262 ~ 19786128 (+) False G29835

Expression Profile