RNA id: XR_006250572.1


Basic Information

Item Value
RNA id XR_006250572.1
length 438
lncRNA type inter_gene
GC content 0.55
exon number 3
gene id LOC122342458
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3117479 ~ 3119550 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCGCTTCGAGTGACGTAACGAACCGGGATGCGCGCGCCAGACACTGGCCTCCATGACCGCCGCGACGTGCACGAGCGCTCCTGCACCTCTTATGTGAGGTGGCACCACACAGAGGCTGTATACAGCGGGCTTCAACCCCGGAGAGCCACACGATGCAGACCTCCTCCAGCACTGGTCTTCTGGGTGTCATTTAGCGTTTGACTGATATGGCCCGTGTAACTGAAGCGTGACTGCAGGAAAAGGACTCACAGACCCAAACCGTGATCATCTATTACTACGTGATCATCAGATCAGCTCTGATAGAGACCTGTCTTCTGCACTCCAAAAGCGGTGATGAAGATGTTGATGATGACGGTGAGGAACACCAGCACAGTGGCCACGTTGTTTATCATGTCCAGCTTCCTCTGATTGGCCACATCGTTGATGTTTTTGCGCGC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048468 cell development biological_process
GO:0022607 cellular component assembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0006996 organelle organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0016043 cellular component organization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250573.1 lncRNA downstream 182 3116404 ~ 3117297 (-) True LOC122342459
TU38062 lncRNA downstream 105265 3006770 ~ 3012214 (-) True ccdc3a
TU38074 lncRNA downstream 121021 2980159 ~ 2996458 (-) True G25625
XR_006250774.1 lncRNA downstream 579473 2534205 ~ 2538006 (-) True LOC122343423
TU37715 lncRNA downstream 580021 2535072 ~ 2537458 (-) False LOC122343423
TU38132 lncRNA upstream 261108 3380658 ~ 3676399 (-) True G25673
XR_006250643.1 lncRNA upstream 283274 3402824 ~ 3403502 (-) True LOC122342758
XR_006250642.1 lncRNA upstream 297037 3416587 ~ 3417917 (-) True LOC122342757
XR_006250584.1 lncRNA upstream 322872 3442422 ~ 3444891 (-) False LOC122342503
XR_006250583.1 lncRNA upstream 322872 3442422 ~ 3444684 (-) True LOC122342503
XM_043236381.1 mRNA downstream 23074 3027071 ~ 3094405 (-) True wnk1b
XM_043237574.1 mRNA downstream 92654 3024248 ~ 3024825 (-) True LOC122343240
XM_043236920.1 mRNA downstream 95967 3019092 ~ 3021512 (-) True LOC122342805
XM_043237663.1 mRNA downstream 99268 3017632 ~ 3018211 (-) True LOC122343283
XM_043237125.1 mRNA downstream 104120 3012766 ~ 3013359 (-) True si:ch211-240l19.8
XM_043236825.1 mRNA upstream 234819 3354369 ~ 3356141 (-) True LOC122342759
XM_043236824.1 mRNA upstream 280830 3400380 ~ 3402341 (-) True LOC122342755
XM_043236169.1 mRNA upstream 399139 3518689 ~ 3520928 (-) True LOC122342398
XM_043236172.1 mRNA upstream 402144 3521694 ~ 3526313 (-) True LOC122342400
XM_043236171.1 mRNA upstream 408485 3528035 ~ 3531141 (-) False LOC122342399
TU38086 other downstream 96022 3021062 ~ 3021457 (-) False LOC122342805
XR_006250644.1 other downstream 741763 2302327 ~ 2375716 (-) False dock4b
XR_006250645.1 other downstream 741763 2304346 ~ 2375716 (-) False dock4b
XR_006250653.1 other downstream 1028900 2042953 ~ 2088579 (-) True cald1a
TU37444 other downstream 1214912 1901843 ~ 1902567 (-) False rsph9
TU38175 other upstream 415287 3534837 ~ 3547467 (-) False LOC122342819
TU38177 other upstream 428676 3548226 ~ 3577096 (-) False LOC122342819
TU38193 other upstream 481450 3601000 ~ 3601974 (-) False LOC122342822
TU38194 other upstream 482808 3602358 ~ 3604270 (-) False LOC122342823
TU38442 other upstream 1145376 4264926 ~ 4267495 (-) True G25880

Expression Profile