RNA id: XR_006250577.1


Basic Information

Item Value
RNA id XR_006250577.1
length 2056
lncRNA type intronic
GC content 0.42
exon number 3
gene id LOC122342474
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 28127214 ~ 28129808 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTATTCGAGCGCAAaccgtgtgttttttttattgaacggAAACGAACGAAACGCGCTGGGCATCTCGCTCGGCGGTCCGCGTTATTAAAACGCTCGTGTTTACGACGCGAATGGCTTGGTGCGCAGTGGCGAGGTTTATGAAAATAAGGGTATACACCATTTTGAACGGAAGGAGGAAGTCGTAATTAACTTGGTCTGCTTTCGAGGCCGTGGGTTTCAATTCTCTGATTGTGTTTACGTGCCCCTGTGTTTTTACAAACGTGGCAGGAATGACCCTGCACCATGATGGAAAATCCAGCTTTAGCTGGCAGCTCTGTTTTACGACATGGTTTCTAGGTGATGTAAGTTGGTAACTAGCTGGTTGACTAGTTACCAAAACCACCTTGATCAACTGTTGTCTTGCTGCTCCAAGATGGTGCACTAGTTAGAAAGTTATGGCCTTCTTGGACCACGCAAAACACAACTACGCCGAATTTGATTTAGAAGTCTAACTTACGATTTTTAATTCAGATGTTAATTAAGATAAACTGGTCTTCAACGCTcaagtgtttttaatcaaaccaATCATTTGATCCGTTGGAGGAAGTGTGCAAGTCTGCATAACAAACAATGCATTGTTTTAGCCCGAATGTTTAGTCTCCGTTGAGTGGAATTGCATGATTGAAGGAAGTTTTGGATGTCTGGCCGTTGAAATGAATCTTAGTCAGCAGTCTTCAGGCCTGTGCGGGCACGTATGCATAGACCTTTTTAATGTTTGGAGTATGGCTGACTTGTTGTGGCTGCTGCCAATGGCTGGTTTTGGTGATGACGCTCCTGTCGTTGAGCTGCTCCTTAGCGCTGCTTTTCATATTGTGGTGACGGTAGCCACGGGGAGGGGGCCTTTGCCTTGCATTTTGGCCAATAGAGGTGGTTAGAAGAGGCCACACCTACCAGACCCTGCGGAGGGTATCCATGGTTGGGGTTTCAGGGGGAGTGTTACGAGAGTCATCATCCCAAGCAGAGACTGCAGCGAAATCACAAAGGAGCCCAGCTTTGATGTCATAGCATGGCGTGTCAACatgttttctcaaaaatgcaCCATTTAATTTGCTTGCAACAGATGCACCACTAGAATTCAATGGGGATATCTGATGTCTTGCTCATTAAAGTTATCATGCCAGTtacatgtctttttaaaattgtatttgaataGGTAAACCTTTATTATGTTTAATCGCAGTTTTCTTAAAGTAAGTGATTATTATAGCTATATATAGACATGTAGTAATAAAATACTTATGAAAAGGAAAAACTAAAGAAAGCCCTATACATctggtaaaatatataaacgcaCTGCAAGaagaaatttttatatttgctataaataatacattgtaaCTCGTAACCTTCTGTTGTCGTATTTTTCTagttaaaaaaatcaacatttctgCATGATTGGcctacattattttaaaaaaatgcctctAAAATTAGTtctttttgatcaatttcacAGAGCGCTTTTACTTTCCAGCCTCTCTTTGTCATAAAGATCCAATCAATTGCTAAAGTCATCATGCCTTAAACGTATATTCTGTTTCCTACTGCAATGCATCATATTACAGAAGTGAAATTGGTAGTAAATGGCATTTCGCGTTGCTTAGAAAGCGCTGCACATTTCCGACATTAGTGTGAGCCGGCTCGCAAATTACACCGTTTAAGAACGAAGAATGATTTTCCAACGTGGCTtggtttgttcatattttaagtGAGGCGTTTAGGGACTTTCAGTCGTCTGATCAAAATGGGCACCGTACAGTCAGGGAGGAATGCAGAGGACTGCATGCGGTGCATTTTAAAGGCTGCGTTTCTGCAGGGAGGTGCGTTTCATGCACATGACAAGTGTGAACTTCCCAATGCGGCCATCATACACGCGTGCATACGATACGGTAGTCTGCAAATGCTGTTATAGTGTGTGTGGATGACGCAGAGATTAGAGAACCTACAGGCAATAACTACCTGTTTTTGTCACGAGAACTTTGTGAATTGAGTGAATATATCACAACGCTGTCTCCGT

Function

GO:

id name namespace
GO:0019905 syntaxin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46868 lncRNA downstream 6054 28120250 ~ 28121160 (-) False LOC122342471
TU46847 lncRNA downstream 30723 28095894 ~ 28096491 (-) True G31737
TU46844 lncRNA downstream 46833 28080175 ~ 28080381 (-) True G31736
TU46834 lncRNA downstream 184410 27941679 ~ 27942804 (-) True G31728
TU46829 lncRNA downstream 204038 27920620 ~ 27923176 (-) True G31723
TU46888 lncRNA upstream 96606 28226414 ~ 28228301 (-) True G31759
TU46889 lncRNA upstream 96606 28226414 ~ 28228301 (-) False G31759
TU46891 lncRNA upstream 96606 28226414 ~ 28228301 (-) False G31759
TU46898 lncRNA upstream 96606 28226414 ~ 28228301 (-) False G31759
TU46905 lncRNA upstream 115182 28244990 ~ 28250107 (-) True G31765
XM_043236290.1 mRNA downstream 8882 28113502 ~ 28118332 (-) False LOC122342469
XM_043236291.1 mRNA downstream 8882 28113502 ~ 28118332 (-) False LOC122342469
XM_043236288.1 mRNA downstream 8882 28113502 ~ 28118332 (-) True LOC122342469
XM_043236289.1 mRNA downstream 9594 28113502 ~ 28117620 (-) False LOC122342469
XM_043236292.1 mRNA downstream 9625 28113502 ~ 28117589 (-) False LOC122342469
XM_043236297.1 mRNA upstream 41443 28171251 ~ 28177586 (-) True LOC122342473
XM_043236295.1 mRNA upstream 51758 28181566 ~ 28187257 (-) False LOC122342472
XM_043236294.1 mRNA upstream 51759 28181567 ~ 28187257 (-) True LOC122342472
XM_043237532.1 mRNA upstream 82438 28212246 ~ 28213047 (-) True LOC122343218
XM_043236728.1 mRNA upstream 238647 28368455 ~ 28382557 (-) False pkma
TU46793 other downstream 59452 28065297 ~ 28067762 (-) True eif1
TU46518 other downstream 482482 27642692 ~ 27644732 (-) True G31508
TU46508 other downstream 511273 27539355 ~ 27615941 (-) True G31503
TU46510 other downstream 574621 27539355 ~ 27552593 (-) False G31503
TU46464 other downstream 740796 27385805 ~ 27386418 (-) False LOC122342454
TU46883 other upstream 55522 28185330 ~ 28186778 (-) False LOC122342472
TU46919 other upstream 234217 28364025 ~ 28365196 (-) True G31776
TU47051 other upstream 714385 28844193 ~ 28846421 (-) True G31868
TU47079 other upstream 843545 28973353 ~ 29012765 (-) True G31890

Expression Profile