RNA id: XR_006250599.1


Basic Information

Item Value
RNA id XR_006250599.1
length 429
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id LOC122342564
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13343726 ~ 13344257 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGCTCCTGCAGAACGTCTCTGGCCTTGTCCTCCAGTCCATCCAGATCCTGAGCTTTCTCCGCCAGAATGTTCTGATTTTCCACGAACGATCGCTCCAGCTCTGGGAGAGTTAAAGGGGAAGAAAAGTGAGGAATCGCAGCTGCTCGGCCTTCTGACGCGCATCAACTACACCTGCTGCCTTCTGATCTATCAGACCACTGGCCAGTTGGTACTTCGGCTGCACAAGTGAGTCAAACTCCTAAaatacgcacacacaaaaaatccACCTGTGAGGCTCGAAAGCGTGCAAGAGAGTATAATATGTATTCAAGAACATCATGTATTTAATGCCTGtgtcatttctcatttttcaacattttcctAACACTTTATGTTCCCCAAAACAATGTTTTCCAATACCTAAATTAAAACCATGTTCAGCATAGCA

Function

GO:

id name namespace
GO:0004175 endopeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function
GO:0004104 cholinesterase activity molecular_function

KEGG:

id description
ko00053 Ascorbate and aldarate metabolism
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42067 lncRNA downstream 23978 13311873 ~ 13319748 (-) True G28377
TU42039 lncRNA downstream 91692 13250651 ~ 13252034 (-) True G28359
TU42040 lncRNA downstream 91692 13250651 ~ 13252034 (-) False G28359
TU42033 lncRNA downstream 98338 13242506 ~ 13245388 (-) True G28353
TU42028 lncRNA downstream 114407 13229094 ~ 13229319 (-) True G28350
TU42094 lncRNA upstream 83771 13428028 ~ 13432669 (-) True G28397
TU42096 lncRNA upstream 83907 13428164 ~ 13432703 (-) False G28397
TU42147 lncRNA upstream 265959 13610216 ~ 13612771 (-) True G28434
TU42310 lncRNA upstream 476439 13820696 ~ 13827052 (-) True G28545
TU42337 lncRNA upstream 522520 13866777 ~ 13867298 (-) True G28564
XM_043236447.1 mRNA downstream 42397 13281183 ~ 13301329 (-) False rbm17
XM_043236444.1 mRNA downstream 42397 13281183 ~ 13301329 (-) True rbm17
XM_043236445.1 mRNA downstream 54020 13281183 ~ 13289706 (-) False rbm17
XM_043236446.1 mRNA downstream 54061 13281183 ~ 13289665 (-) False rbm17
XM_043237036.1 mRNA downstream 68252 13268534 ~ 13275474 (-) True pfkfb3
XM_043236432.1 mRNA upstream 1698 13345955 ~ 13361937 (-) True tmcc3
XM_043236433.1 mRNA upstream 1698 13345955 ~ 13361936 (-) False tmcc3
XM_043236714.1 mRNA upstream 29374 13373631 ~ 13375343 (-) True ndufa12
XM_043236711.1 mRNA upstream 31917 13376174 ~ 13384446 (-) True nr2c1
XM_043236707.1 mRNA upstream 40331 13384588 ~ 13403216 (-) True fgd6
TU41785 other downstream 854570 12481920 ~ 12489156 (-) False cpm
TU41786 other downstream 854570 12482102 ~ 12489156 (-) False cpm
TU41650 other downstream 1327959 12014631 ~ 12015767 (-) True G28093
XR_006250735.1 other downstream 1797914 11426497 ~ 11545812 (-) False ppfia2
TU41528 other downstream 1919643 11422069 ~ 11424083 (-) False ppfia2
TU42098 other upstream 67367 13411624 ~ 13422539 (-) False G28397
XR_006250767.1 other upstream 348688 13692945 ~ 13698715 (-) False LOC122343399
XR_006250766.1 other upstream 348923 13693180 ~ 13698715 (-) False LOC122343399
XR_006250741.1 other upstream 471317 13815574 ~ 13831851 (-) True LOC122343280
TU42363 other upstream 631100 13975357 ~ 13980559 (-) True G28575

Expression Profile