RNA id: XR_006250602.1


Basic Information

Item Value
RNA id XR_006250602.1
length 299
lncRNA type inter_gene
GC content 0.56
exon number 3
gene id LOC122342584
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26933340 ~ 26934351 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGATGACCAGGTTGAGGGCTTTTGCAAGCTCTGGTGCATGGCCTTCTGGAGGCAACAGACCAGCACCACGGCAGCGGAAGTGGTATGACCTCTACCAGAAGattgAGAAATGCCCCCTGCAAGCTCATGGACAGACCACCCTCTTTGGTGGGTCCAAGGCATGCAGTTGTGGATTCCACACCACCAagCCTGCCACTGCTACTTTATCACAGGCCACTGCTGCACCTCCACAATCTGAGGCTTCAGACACGGCTCCTGCCCCACGGTCATTCCTGAGGCCCTCTTCTACTTTATCAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46384 lncRNA upstream 31335 26901712 ~ 26902005 (+) True G31424
TU46382 lncRNA upstream 64869 26868192 ~ 26868471 (+) True G31422
TU46380 lncRNA upstream 153734 26779293 ~ 26779606 (+) True G31420
XR_006250760.1 lncRNA upstream 163520 26768931 ~ 26769820 (+) True LOC122343359
TU46370 lncRNA upstream 454407 26478716 ~ 26478933 (+) True G31412
TU46387 lncRNA downstream 58683 26993034 ~ 26993354 (+) True G31427
TU46388 lncRNA downstream 149966 27084317 ~ 27084707 (+) True G31428
TU46389 lncRNA downstream 263536 27197887 ~ 27198266 (+) True G31429
TU46401 lncRNA downstream 298745 27233096 ~ 27233432 (+) True G31438
TU46404 lncRNA downstream 363185 27297536 ~ 27369182 (+) False LOC122342372
XM_043236145.1 mRNA upstream 166167 26764953 ~ 26767173 (+) True LOC122342366
XM_043236142.1 mRNA upstream 506101 26382916 ~ 26427239 (+) True LOC122342362
XM_043236141.1 mRNA upstream 755722 26173194 ~ 26177618 (+) True LOC122342360
XM_043236137.1 mRNA upstream 955717 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 1204689 25711662 ~ 25728651 (+) True col9a3
XM_043236148.1 mRNA downstream 70350 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 273385 27207736 ~ 27210602 (+) True LOC122342370
XM_043236327.1 mRNA downstream 422461 27356812 ~ 27358163 (+) True LOC122342494
XM_043236150.1 mRNA downstream 429667 27364018 ~ 27371196 (+) True LOC122342372
XM_043236921.1 mRNA downstream 455988 27390339 ~ 27406088 (+) True LOC122342806
unassigned_transcript_860 other upstream 2702 26930552 ~ 26930638 (+) True trnay-gua_25
unassigned_transcript_825 other upstream 286383 26646885 ~ 26646957 (+) True trnav-aac_2
unassigned_transcript_824 other upstream 288383 26644885 ~ 26644957 (+) True trnav-cac
unassigned_transcript_823 other upstream 289136 26644132 ~ 26644204 (+) True trnav-aac_1
unassigned_transcript_822 other upstream 290205 26643063 ~ 26643135 (+) True trnav-aac
unassigned_transcript_863 other downstream 18660 26953011 ~ 26953084 (+) True trnar-acg_23
unassigned_transcript_864 other downstream 19209 26953560 ~ 26953646 (+) True trnay-gua_26
unassigned_transcript_866 other downstream 24145 26958496 ~ 26958568 (+) True trnar-acg_24
unassigned_transcript_867 other downstream 24499 26958850 ~ 26958920 (+) True trnae-uuc_19
unassigned_transcript_868 other downstream 24691 26959042 ~ 26959128 (+) True trnay-gua_27