RNA id: XR_006250616.1



Basic Information


Item Value
RNA id XR_006250616.1
length 615
lncRNA type inter_gene
GC content 0.47
exon number 5
gene id LOC122342618
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9547639 ~ 9552161 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ACCCTGGTCTTTTTCAAAGGCTTGGTTTTCAACTCCAAAACTTTCAACTTTGGTTGGCACCAAACCATCCTGTGAAGGACAGGAGATATGGGAAAAGGCAGATATGAGAAAGACCAGAATGTGGCGTCACGGACTCAGATATCAGTATTTGGGACATTTCCAAGAGTGGCACAATGAGGGCTGAATGAAATAAGAGTTTAATCTTCACAACAATCTGTTCGGTTCTGCCTCCAGAGAACAGGCACTTCACACATCTGCATGAACATGCCCTTCAGGTTGGCTATAACAATGCCAGCCAGCACTGACTGTGAGACAGAGAGGGGTGAATATTCCTTGTCAGGAAGCAGGAAATGCCATAGGAAGTGCTCTTACCCCCTTGGGAGGCTGTGGACAATGCTGGCGCCGTACTGGGAGTTTAGGTCCATCCCATGAGAGACTGCAGAAGCTATCACTGTCTATCAGTTCGAAAGATTGAAAGGTTTTAACCTTTACCTGAAATAGTCCAACCAACACTGTCATGGTACAAGCCACCAGGATTCTCTGGGCCTCTCTTGCCTCTACATCAACCTCCATTAACCCTTTATCTGCCACCGTCTCATTCACACCTGTGAAGTT

Function


GO:

id name namespace
GO:0009651 response to salt stress biological_process
GO:0055081 anion homeostasis biological_process
GO:0006821 chloride transport biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU40803 lncRNA downstream 2218 9545208 ~ 9545421 (-) True G27532
TU40714 lncRNA downstream 43639 9498716 ~ 9504000 (-) True G27469
XR_006250778.1 lncRNA downstream 205900 9330007 ~ 9341739 (-) True LOC122343442
TU40644 lncRNA downstream 523562 9023877 ~ 9024077 (-) True G27425
TU40633 lncRNA downstream 543416 9003923 ~ 9004223 (-) True G27417
TU40813 lncRNA upstream 13286 9565447 ~ 9568297 (-) True G27540
TU40835 lncRNA upstream 45296 9597457 ~ 9654377 (-) False G27549
TU40837 lncRNA upstream 84788 9636949 ~ 9654377 (-) True G27549
TU40887 lncRNA upstream 145535 9697696 ~ 9744787 (-) True G27581
TU40939 lncRNA upstream 463021 10015182 ~ 10015754 (-) True G27627
XM_043236576.1 mRNA downstream 4132 9534425 ~ 9543507 (-) True def6c
XM_043236698.1 mRNA downstream 16589 9523067 ~ 9531050 (-) True atxn10
XM_043236699.1 mRNA downstream 70925 9461383 ~ 9476714 (-) True pparaa
XM_043236705.1 mRNA downstream 86583 9458750 ~ 9461056 (-) True cdpf1
XM_043238003.1 mRNA upstream 25133 9577294 ~ 9580814 (-) True cbll1
XM_043238004.1 mRNA upstream 31477 9583638 ~ 9586982 (-) True mcat
XM_043238005.1 mRNA upstream 35835 9587996 ~ 9632618 (-) True rap1b
XM_043236519.1 mRNA upstream 102295 9654456 ~ 9674110 (-) False prrt4b
XM_043236518.1 mRNA upstream 102296 9654457 ~ 9674005 (-) False prrt4b
XR_006250565.1 other downstream 247460 9271972 ~ 9300179 (-) False uhrf1bp1l
XR_006250745.1 other downstream 538335 9004260 ~ 9009304 (-) False klhl42
XR_006250786.1 other downstream 606368 8894184 ~ 8941271 (-) False LOC122343470
TU40990 other upstream 803550 10355711 ~ 10357205 (-) False zgc:193726
XR_006250794.1 other upstream 806263 10358424 ~ 10363566 (-) True zgc:193726
TU41528 other upstream 1869908 11422069 ~ 11424083 (-) False ppfia2
XR_006250735.1 other upstream 1874336 11426497 ~ 11545812 (-) False ppfia2
TU41650 other upstream 2462470 12014631 ~ 12015767 (-) True G28093

Expression Profile