Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_006250625.1 |
| length | 546 |
| lncRNA type | inter_gene |
| GC content | 0.50 |
| exon number | 5 |
| gene id | LOC122342667 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056702.1 |
| NCBI id | CM032071.1 |
| chromosome length | 29200999 |
| location | 17090539 ~ 17119106 (+) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0006259 | DNA metabolic process | biological_process |
| GO:0005524 | ATP binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0008094 | DNA-dependent ATPase activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU43107 | lncRNA | upstream | 4682 | 17046871 ~ 17085857 (+) | False | G29089 |
| TU43104 | lncRNA | upstream | 4682 | 17065277 ~ 17085857 (+) | True | G29089 |
| TU43106 | lncRNA | upstream | 4682 | 17065277 ~ 17085857 (+) | False | G29089 |
| TU43100 | lncRNA | upstream | 49709 | 17038454 ~ 17040830 (+) | True | atp5mj |
| TU43101 | lncRNA | upstream | 49767 | 17038454 ~ 17040772 (+) | False | atp5mj |
| TU43230 | lncRNA | downstream | 100036 | 17219142 ~ 17219514 (+) | True | G29178 |
| TU43233 | lncRNA | downstream | 101151 | 17220257 ~ 17220616 (+) | True | G29181 |
| TU43244 | lncRNA | downstream | 175269 | 17294375 ~ 17294640 (+) | True | G29192 |
| TU43253 | lncRNA | downstream | 266183 | 17385289 ~ 17385680 (+) | True | G29200 |
| TU43359 | lncRNA | downstream | 434727 | 17553833 ~ 17554190 (+) | True | G29272 |
| XM_043236555.1 | mRNA | upstream | 7419 | 17040857 ~ 17083120 (+) | False | ppp1r13bb |
| XM_043236554.1 | mRNA | upstream | 7419 | 17041350 ~ 17083120 (+) | True | ppp1r13bb |
| XM_043236553.1 | mRNA | upstream | 7419 | 17041350 ~ 17083120 (+) | False | ppp1r13bb |
| XM_043236556.1 | mRNA | upstream | 7419 | 17041350 ~ 17083120 (+) | False | ppp1r13bb |
| XM_043236552.1 | mRNA | upstream | 7419 | 17051947 ~ 17083120 (+) | False | ppp1r13bb |
| XM_043236670.1 | mRNA | downstream | 3327 | 17122433 ~ 17176497 (+) | True | brf1b |
| XM_043237833.1 | mRNA | downstream | 147351 | 17266457 ~ 17293636 (+) | True | nudt14 |
| XM_043237097.1 | mRNA | downstream | 189187 | 17308293 ~ 17348870 (+) | False | jag2b |
| XM_043237095.1 | mRNA | downstream | 189188 | 17308294 ~ 17348870 (+) | True | jag2b |
| XM_043237096.1 | mRNA | downstream | 189188 | 17308294 ~ 17348870 (+) | False | jag2b |
| TU42966 | other | upstream | 616158 | 16473898 ~ 16474381 (+) | True | G28982 |
| TU42861 | other | upstream | 1104813 | 15985219 ~ 15985726 (+) | True | G28899 |
| TU42853 | other | upstream | 1248684 | 15841372 ~ 15841855 (+) | True | G28891 |
| TU42722 | other | upstream | 1435358 | 15650295 ~ 15655181 (+) | True | cdkn1d |
| TU42701 | other | upstream | 1534857 | 15439334 ~ 15555682 (+) | True | G28806 |
| TU43729 | other | downstream | 1181309 | 18300415 ~ 18301189 (+) | True | G29526 |
| TU43756 | other | downstream | 1317354 | 18436460 ~ 18461317 (+) | True | G29545 |
| TU43926 | other | downstream | 1764073 | 18883179 ~ 18886402 (+) | True | G29642 |
| TU44195 | other | downstream | 2171114 | 19290220 ~ 19342911 (+) | True | G29814 |
| TU44225 | other | downstream | 2612156 | 19731262 ~ 19786128 (+) | False | G29835 |
