RNA id: XR_006250636.1


Basic Information

Item Value
RNA id XR_006250636.1
length 315
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id LOC122342717
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5914217 ~ 5916247 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGAACTGCATTTTTCATCCGCTCCACAAGGCGGCAGAAGCGCCTTTCAGAGACGTCGAATCCCCGACTGATCAGAAGACGTAGAAAcctgggaagaaaacacaacagttCGCGTCAATAGTAAGAGAGGTGTTGAACAGAAGCAGAGCCCTGGAGCGTGAGGACAGACATTGACCGCAATGAAGGACGTGTGCTGAAGGACGGgactcattttcaatgatgccAACCTTCCTTTTTCGTGTTCAGACTGAAGTACATTAAAgtggatctgttttgtcttttgcgaaAGGAAGAAGACAAGCGTCAAGTGATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39199 lncRNA upstream 703 5909380 ~ 5913514 (+) True G26422
XR_006250635.1 lncRNA upstream 1056 5911074 ~ 5913161 (+) True LOC122342716
TU39192 lncRNA upstream 1064 5904654 ~ 5913153 (+) False LOC122342716
TU39193 lncRNA upstream 1064 5907867 ~ 5913153 (+) False LOC122342716
TU39197 lncRNA upstream 1064 5907867 ~ 5913153 (+) False LOC122342716
XR_006250637.1 lncRNA downstream 1257 5917504 ~ 5922916 (+) True LOC122342718
TU39343 lncRNA downstream 300594 6216841 ~ 6297920 (+) False G26517
TU39345 lncRNA downstream 300594 6216841 ~ 6297920 (+) False G26517
TU39341 lncRNA downstream 379886 6296133 ~ 6297920 (+) False G26517
TU39342 lncRNA downstream 379886 6296133 ~ 6297920 (+) False G26517
XM_043236976.1 mRNA upstream 15390 5862607 ~ 5898827 (+) True LOC122342837
XM_043236201.1 mRNA upstream 32940 5877534 ~ 5881277 (+) True LOC122342428
XM_043236202.1 mRNA upstream 38088 5872659 ~ 5876129 (+) True LOC122342429
XM_043236287.1 mRNA upstream 51904 5850488 ~ 5862313 (+) True LOC122342465
XM_043236305.1 mRNA upstream 193963 5719009 ~ 5720254 (+) True tnnt2c
XM_043237912.1 mRNA downstream 25579 5941826 ~ 6015837 (+) True tmem178b
XM_043236355.1 mRNA downstream 128636 6044883 ~ 6054197 (+) True mkrn1
XM_043236356.1 mRNA downstream 138911 6055158 ~ 6059544 (+) True tmem121b
XM_043236369.1 mRNA downstream 277262 6193509 ~ 6234938 (+) False lmo3
XM_043236371.1 mRNA downstream 277263 6193510 ~ 6234938 (+) False lmo3
TU39185 other upstream 16446 5892985 ~ 5897771 (+) False LOC122342837
TU39144 other upstream 60836 5781944 ~ 5853381 (+) False LOC122342465
TU39141 other upstream 60836 5850429 ~ 5853381 (+) False LOC122342465
unassigned_transcript_304 other upstream 515250 5398880 ~ 5398967 (+) True trnay-gua_2
XR_006250627.1 other upstream 522591 5354332 ~ 5391626 (+) False pcloa
TU39399 other downstream 472590 6388837 ~ 6390927 (+) True vhll
TU39561 other downstream 1309274 7225521 ~ 7227437 (+) True G26692
XR_006250877.1 other downstream 1453888 7370135 ~ 7370275 (+) True LOC122343893
XR_006250876.1 other downstream 1457607 7373854 ~ 7373994 (+) True LOC122343892
XR_006250663.1 other downstream 1616673 7532920 ~ 7558489 (+) False ube2h

Expression Profile