RNA id: XR_006250652.1


Basic Information

Item Value
RNA id XR_006250652.1
length 628
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id LOC122342795
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 387195 ~ 388081 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCATGCACACGAGATGTTCACTCACAGATGCAATCATCTAGAGATGTACTTAAGAGCTACTGTGAGTGTTCAGTAAATAACTTCCTGTgagaaaatgtaagcatttaaTGTACGACAtctgaatacaaaaaaagctgtttttttttgttgttactttGGAGCTCAGCatcattttcaatttattaCGAAGGTAAGCAAATGgcacatttttacttttgaatgaatcattggGTCTAAAGGGACCATATATTTGATTTGAGAGCTATATTGAATTTTCAGTGAATGAATGCTTATGTTTTGCTTGTTTCTCACAGAATGAACAACATCAGAagaattctttttttcccatttcagTCTGAAATTGGATTTTAAACAACATGAGGGAGTTACTGACAAAATTTTCAGTTTTCCTAAATTGCTTCCAAGCCTTGGGAGTTTCCATTTACTTCATTACCTTATATTAGTGATGAAAGAAAGCTGAGAACAGATGGAAAGTTTATATACTACATCTGAATACACAATTGTTCTTGTGATTTTGGAGCTTAACCAGTTACTTTCTGATTCATGGACAAAAAAAGAATCAGTGAGAGCCACAAGTAAAAGTTAGGCTGACCCCCTAATTTCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36692 lncRNA upstream 4017 380551 ~ 383178 (+) True G24638
TU36686 lncRNA upstream 7751 379203 ~ 379444 (+) True G24635
TU36685 lncRNA upstream 10987 375925 ~ 376208 (+) True G24634
TU36684 lncRNA upstream 12351 374558 ~ 374844 (+) True G24633
TU36679 lncRNA upstream 14342 372374 ~ 372853 (+) True G24631
TU36708 lncRNA downstream 46310 434391 ~ 436596 (+) False gpr22a
TU36752 lncRNA downstream 192028 580109 ~ 580350 (+) True G24687
TU36831 lncRNA downstream 219206 607287 ~ 607514 (+) True G24746
TU36836 lncRNA downstream 227519 615600 ~ 615856 (+) True G24751
TU36839 lncRNA downstream 231396 619477 ~ 619696 (+) True G24754
XM_043236781.1 mRNA upstream 26273 343592 ~ 360922 (+) True zdhhc17
XM_043237775.1 mRNA upstream 174036 205505 ~ 213159 (+) True LOC122343357
XM_043237774.1 mRNA upstream 187659 195092 ~ 199536 (+) True glipr1a
XM_043236793.1 mRNA upstream 193712 184716 ~ 193483 (+) False cmah
XM_043237828.1 mRNA upstream 279890 90208 ~ 107305 (+) True frs2a
XM_043236911.1 mRNA downstream 46262 434343 ~ 439352 (+) True gpr22a
XM_043236912.1 mRNA downstream 46262 434343 ~ 439352 (+) False gpr22a
XM_043236913.1 mRNA downstream 49102 437183 ~ 439352 (+) False gpr22a
XM_043236972.1 mRNA downstream 472515 860596 ~ 863551 (+) True LOC122342832
XM_043236966.1 mRNA downstream 479115 867196 ~ 888759 (+) False LOC122342829
TU36683 other upstream 13113 373527 ~ 374082 (+) True G24632
TU36680 other upstream 13371 373527 ~ 373824 (+) False G24632
TU36656 other upstream 92126 293235 ~ 295069 (+) True G24609
TU36577 other upstream 302233 83688 ~ 84962 (+) True G24555
TU36860 other downstream 266011 654092 ~ 665530 (+) True G24771
TU37077 other downstream 900231 1288312 ~ 1291224 (+) True ndufa5
TU37269 other downstream 1282431 1670512 ~ 1672959 (+) True LOC122343488
TU37230 other downstream 1396211 1784292 ~ 1788096 (+) True LOC122342451
TU37871 other downstream 2727427 3115508 ~ 3117988 (+) True ninj2

Expression Profile