RNA id: XR_006250658.1


Basic Information

Item Value
RNA id XR_006250658.1
length 3100
lncRNA type inter_gene
GC content 0.40
exon number 5
gene id LOC122342883
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16897515 ~ 16911342 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tTAGCACGAcgacatatttaaataataataataataagtaattttttaaataaaaaagcaccaTACTATTGACTGAGCTGCTGACACATTTAggtaaatggaaatgtttttagaGTGAAGGATGTGGCTACTATATGATGTGGTTACAACTTAATAAACaacagcataaaataaaatggcgtGAGCTCTTATTAAGAGTGAAAGCTTATTTGGCCTAATGTATAACACAACATATTACAACATCCATATTTAACTGCATATAATAGAATCGTATCTCTAGCTCATCACACTAACCTTCTAGCACAGTCTCTTAGTCATTCTATCTTACCATCTAAGTCATTCTCTCAGTTATTATCATTTAGCTGGCCCTGCCATGTGGGAGGAATTCCTGTAACACGAGGCAAGACAAGGAAAGCAGGACGAGCTGGTTCAGGGAGTCAAGTCCACAGCACGCACCACCAAACACAACAAGCACTTCAGGGATCGGAAGGTGCAAGCATTGACCCAACCACCTCAacagtatataaaaatcaaCCTAGCATCTGATTaaactcttttttaaaaacatacatataaaacacactATAGGTTGCTCTGAACCCGTACGTGATATGGATGTGGACATCCTAACAAGATGTCAGTTTACATTCTGATAACTACTGCAAGTAACACACGTGGATGTACAACACAGGAGAGGTTATAAGGGGCAACAAGAGGAATCCAGCTAGTTTGGTCGAGCAGCATGTCTGCACTGGAGCGTGGGCCAGCAGGTTCAGGAAATCTCTCGGAAAGCCATGAGTATTAGTATCCAGGCCTCGACCGGATGCCCCAAAGCTCAGGGTTCAAGCTTCATCCCGTTCTTCCCTCTCCCAGAGCTGAGGACGGGGGAAAGGAAAGAgcatttcttttgcatttatatatattttttttaaattcactttgTTTGCTGTTATTGATACCATACacgtatttttatatttacacagcAATCCCCACTCTACCCTCATAAACTACGTATCATCCATGAGCCTTAAGCTTTCACAACACAGCACAGCGTCCCTCAGGGATGTTTTACTCCAGGTCTCGGCAAAGGCCAGCTGTCACTGTAAACTGAGCCGGGTGGACCCTCACGAACAGCTCAGCCTCTGCCCAGCTGCCGCCTTGGGATCTTATCAGCCACGGGACCATGCAACACAGACAATCTGGACCTGGTTTGTGTTTCAAGGCCATTCAAAATGACCTAAATGACATCAATAACACACTTGTGGTGGAAACGGGTCAAAAAAACGTAGACTTGTGTGTTGAAAACCaatgaatatttgcatttttaaaaactaaccTGTGACATATGAAGTATCTTtagaaatgagaaaattaaAGTTTAAGTTAAAGTAAAATTATCAATTTTAGTAATAGAAGGAGTGagaaaaaattatagaaaaaaCTTTATAGTGTTTCTTAGATTAGATGTAACTTAAAATGCAGTTATGCATTGGTTCAACAATCCTAAGCAACAACATGAACGCAACTCACAAGGACATTTCTtcaaatttctttcaaaacttcCTTATATGACTATTTAAATTTGGTCCCCAATGGCAGTGCACATAGACAATAACACAAATAAGatctataaatatttcattttccagaAACACTCACTTTCCATTAACACTTAGatgctttttttctattaatgATAAGAATgaaaattatgctaaaaattgcaatattaggatgagtaaatgatagcatttaaactgagaaaatgatGAATGTTCATCAttccctttaaaatattttaatctatGAACACAGCAACGTATTTCCTTGGATATGATTATTTGAGCTTACAGAACCAAGAGAGGACACAAAAAGGAATCATTGTTAGGTCCAGACATTTCTGGTATTTCTGATTGCACTAAACGACAGCAATGTTCTGATGTGAAATCAAATGTTTGAAACTGATTGACGTACAGGTCTTCATCCCGGCAATGGAATTCATGACACACCAGCACCTCAGACAGCAGCCTCTTAATTAGAACAAATGCCTTCCCTCCAGGCTTTCTTGCAATAACAGTGGGACTGTAATTAAACTCAATTAGCTCATCAGCTTTAAAGTGGGTTAAGTGATGTTTACTCAACATGGGCTAATTGTGTGGCATATGGTAAGCTTGGTAGATGGAAGTGTAGGGGTGGGTTTGTTGTTGGATAGCTTGGGATAGGTCTGCAGTAAAGCTATCAGGGATTACCTGGGCTGATGGTGGTGGTCCTGACGGCCCCCGAGGGGACGTGAGGGTTGAGAACTCAGAATCTGAGGGGGGGGCTTGAAGAACTCTTCCTTTTGGGAGAGCTCTAAAAAtgtcaagagagagagaaatatacaATGCTAACAATAACTagttcataaatatttttagaatatttacagtgataaagtatataaaacatttatacaaaaaactaaaataaactatttttaggatatactatataaattaaacataaagtTCTAtgtaacaaacacaaatatagaTCAGATTAAGCTCTCTAATGGCATCACTGGTAAACGGACCGATGTTAAACAATGCATTTCAGTGTCACTGTGGTTGGTTAAGAGTAGCAGGGTTGCTCTTTTTCTGTCCAGGGAACAGTGACAGCTGTGGGGCCAACAGTGGGTCCGAGCTCCCCTGCAGCTGTCTGGTGTGCCTGGGGTGGAATGACTCAGTGATCCTCCTCTAACTGGACAGATCCGGACCAGCACAACACCTGCTCTTTCTGGCAGAGCACAGGCAGGCCAACCTTGACTGACGTGAGGGAAttctaaaacacacagatatactGCCAGAGGACACTAAACACATATGAAGGAATACACCGGTGTATATGGAGATGCTTCCATGAAGAGCTTCAAGGCTATTTCCAGCTCAACGCGGGCGGCTGTCCTTCCTGGTTTGATCCCCTAGGCAACCGATGTGGTCATTCCTTCCAGAAAATGGAGAGCAGTGTGTAACCAAACACCAACAGGGGCCCCAGAAaaactagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaggtgtacATTATGCTTGAA

Function

GO:

id name namespace
GO:0044459 obsolete plasma membrane part cellular_component
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098797 plasma membrane protein complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43024 lncRNA upstream 144926 16748718 ~ 16752589 (+) True G29026
XR_006250728.1 lncRNA upstream 197297 16698521 ~ 16700218 (+) True LOC122343214
TU43008 lncRNA upstream 287511 16609724 ~ 16610004 (+) True G29011
TU42977 lncRNA upstream 357355 16519411 ~ 16540160 (+) True G28991
TU42969 lncRNA upstream 422182 16474743 ~ 16475333 (+) True G28985
TU43090 lncRNA downstream 29674 16941016 ~ 16941310 (+) True G29078
TU43099 lncRNA downstream 125931 17037273 ~ 17038220 (+) True G29086
TU43100 lncRNA downstream 127112 17038454 ~ 17040830 (+) True atp5mj
TU43101 lncRNA downstream 127112 17038454 ~ 17040772 (+) False atp5mj
TU43107 lncRNA downstream 135529 17046871 ~ 17085857 (+) False G29089
XM_043237784.1 mRNA upstream 59091 16822113 ~ 16838424 (+) True rhoj
XM_043237522.1 mRNA upstream 187359 16701043 ~ 16710156 (+) True chrna2b
XM_043237523.1 mRNA upstream 187359 16701043 ~ 16710156 (+) False chrna2b
XM_043236038.1 mRNA upstream 280297 16615345 ~ 16617218 (+) True LOC122342226
XM_043236529.1 mRNA upstream 440218 16436391 ~ 16457297 (+) True ptprb
XM_043237031.1 mRNA downstream 13675 16925017 ~ 16932206 (+) True six4b
XM_043236321.1 mRNA downstream 26457 16937799 ~ 16939687 (+) True six1b
XM_043237785.1 mRNA downstream 88563 16999905 ~ 17026338 (+) True rtn1b
XM_043237786.1 mRNA downstream 105267 17016609 ~ 17026338 (+) False rtn1b
XM_043237706.1 mRNA downstream 122579 17033921 ~ 17037157 (+) True rd3l
TU42966 other upstream 423134 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 911789 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 1055660 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 1242334 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 1341833 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 1389073 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 1525118 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 1971837 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 2378878 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 2819920 19731262 ~ 19786128 (+) False G29835

Expression Profile