RNA id: XR_006250674.1


Basic Information

Item Value
RNA id XR_006250674.1
length 1332
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id LOC122343158
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17710055 ~ 17711711 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttaatattactttcactttcatttttgtcCTGAGAACATTACGACGCAACATGCCTAATCAATGCTTTAAGTTGTACTTATTGCACGATTCGTTTGTTTTTACGCTCCAAAATCTGCCAATCATTGTTCTGTAGAAAATGTACAAGTGTATGATCTGACCGACGATCTCAGCGAGGAGGAAAATATTCTAGAGGTGCCATCTCCGCCATCTCGAACTGAATCAATAATGAATAACAAATCTATAAGCAATTTTGGAACCCAGGAAGATGAAAACAAACTATATCCCACAAACACATGCCCGGTTTGTTTCTCTGCACTTAAAGCCGCATGTATAAAGGGTACTACTGGACTGCTTCAGTGCACTCGATGCCCGAGCACTCAGCTCCTGTGCGGCTCCTGCCTTTACCCCACGACCTCAGCCGCCTGCACCAACAAGCTGTGCCCCCTCGTCTCCACACTGCTAACCTGCGACTTGGTATCAGATTCAAAGAGCAAAGTGTACGGTTGTCCAACGTTCAGAGCCTGTCCCAAATGTCACAATCTGATTATGCATGAAAAAGGATGCAAGTTTGTAACATGCAGATCATGCCTTCACCGGTTTTGTTTCATCTGCTTGCAAGGTGATTGTAGCAAAGATAAAGAAAAGTACTGGAATCTTTTTTGCAAAAATCCAAGAGCAAAAAGACAGAGATTTATGTCACCACAATCCTAAACAGAGATCCTTCACACTGGATAATATTGTCTAAGATCCAAATGATTAAAAGATTTGttaatatagaatatagatGCTATATAGAAGCAAACAGTAACAAAATTCATTTCACAAACTAATTtaatctgcaaaacaaaaataacattgcaTTGAGCCCATTTTTCCTCTGTGCTTTGAATCTATGCTGTGCCATATACCTAAGATGAACTTTAGTTAGCAGGTCTTCTATATTACTTGCCTTTTTCCCCTTGCAGTTgtagtgtttttctttatttcatttattatgtttgtgtGGTTTGAGGGGTCTTCACAAGTTAGAAATGGAGAGAATGTCtccattttaaagattttgatGGTTGGTATAACACTTGTTGATTTGTGAAGATCAAGTACAAAAGGGTTCAAGTTCAGATTAATCCTGAGCACCATAACACAGATGGCTAAAGGCTGGAAGACActacatgacttttaaaatttgaacagattttaaaatgctagGCATCATACATTTTTCCAACTTTGTAAATAGTCTAATGAACTACATGTTTCTACATGAAGTCTTGTAAGATATTCCAGACcttagaaatattatataaaatttgctattttttttccatca

Function

GO: NA

KEGG:

id description
ko03450 Non-homologous end-joining

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250563.1 lncRNA upstream 40294 17667150 ~ 17669761 (+) True LOC122342426
TU43359 lncRNA upstream 155865 17553833 ~ 17554190 (+) True G29272
TU43253 lncRNA upstream 324375 17385289 ~ 17385680 (+) True G29200
TU43244 lncRNA upstream 415415 17294375 ~ 17294640 (+) True G29192
TU43233 lncRNA upstream 489439 17220257 ~ 17220616 (+) True G29181
TU43407 lncRNA downstream 26356 17738067 ~ 17739667 (+) True G29305
TU43408 lncRNA downstream 33817 17745528 ~ 17746317 (+) True G29306
TU43425 lncRNA downstream 105835 17817546 ~ 17817933 (+) True G29317
TU43456 lncRNA downstream 106435 17818146 ~ 17818416 (+) True G29331
TU43464 lncRNA downstream 111539 17823250 ~ 17823740 (+) True G29334
XM_043236807.1 mRNA upstream 44158 17644435 ~ 17665897 (+) True kdr
XM_043236808.1 mRNA upstream 79233 17582070 ~ 17630822 (+) True clocka
XM_043236810.1 mRNA upstream 79233 17582070 ~ 17630822 (+) False clocka
XM_043236809.1 mRNA upstream 79233 17607074 ~ 17630822 (+) False clocka
XM_043237593.1 mRNA upstream 131251 17565453 ~ 17578804 (+) False nmu
XM_043237278.1 mRNA downstream 94129 17805840 ~ 17811463 (+) True LOC122343009
XM_043237493.1 mRNA downstream 189730 17901441 ~ 17902917 (+) True oxt
XM_043237498.1 mRNA downstream 200728 17912439 ~ 17915594 (+) True fabp1a
XM_043237496.1 mRNA downstream 200730 17912441 ~ 17915435 (+) False fabp1a
XM_043237497.1 mRNA downstream 200730 17912441 ~ 17915435 (+) False fabp1a
TU42966 other upstream 1235674 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 1724329 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 1868200 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 2054874 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 2154373 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 588704 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 724749 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 1171468 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 1578509 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 2019551 19731262 ~ 19786128 (+) False G29835

Expression Profile