RNA id: XR_006250676.1


Basic Information

Item Value
RNA id XR_006250676.1
length 605
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id LOC122343160
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23454277 ~ 23455816 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGCCTGTAAAGCCGACGCCTGCTGCTGTCCTCCTCAGGTGCAGTTTGCTCAGGTTTTACCTCCACAGTCGTCTGATGTGGTTCGTTTCCAGGATCTGAACAGATCAGAGaTACCCGTGACCAGCAGCTCTTTCATTCATCAACATCCTGCAGACGTTCCTCCACAATACACTGAAAGCAAatatgaataagtgttccctcaaaaaaaaaagggaacatACAGGACATGTTCAAAAAATTTCCATACATGGGAATCTATACTGAAGTATATTCATGGACCATGTATGAATATAATTTGAGGAATTTAAAAGTACATGTCAAACCTGTAGTACATTTTTACAAGAAACAGCTTAattgaaaaactaaatttctccttgttttatatagctgaaaacattcataaacatttctatcactttgtaatatatcactataatatatattttttttctaggcTGTATGTGTATACACTTCAAACTATCATACTGTATCAAAtctacatattataaatacattatataagtaaatatatatttgctcgTCCTGCTCTGAtacacattaaagggatagttcacccaaaaaggacaTTAATTACTCGTCTTCAT

Function

GO: NA

KEGG:

id description
ko04142 Lysosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45844 lncRNA downstream 57004 23391679 ~ 23397273 (-) True G31012
TU45824 lncRNA downstream 187419 23266625 ~ 23266858 (-) True G30994
TU45823 lncRNA downstream 188147 23265758 ~ 23266130 (-) True G30993
TU45822 lncRNA downstream 190061 23263732 ~ 23264216 (-) True G30992
TU45790 lncRNA downstream 400657 23051748 ~ 23053620 (-) True G30967
TU45858 lncRNA upstream 2911 23458727 ~ 23471751 (-) True G31020
TU45864 lncRNA upstream 18439 23474255 ~ 23474823 (-) True G31024
TU45850 lncRNA upstream 22709 23478525 ~ 23493889 (-) True G31017
TU45851 lncRNA upstream 30798 23486614 ~ 23489938 (-) False G31017
XR_006250712.1 lncRNA upstream 38510 23494326 ~ 23496751 (-) True LOC122343190
XM_043236117.1 mRNA downstream 18752 23416891 ~ 23435525 (-) True LOC122342328
XM_043237389.1 mRNA downstream 194958 23256365 ~ 23259319 (-) False LOC122343073
XM_043237390.1 mRNA downstream 194958 23256365 ~ 23259319 (-) True LOC122343073
XM_043236116.1 mRNA downstream 203663 23240075 ~ 23250614 (-) True LOC122342325
XM_043236115.1 mRNA downstream 217197 23230042 ~ 23237080 (-) True LOC122342324
XM_043237441.1 mRNA upstream 269936 23725752 ~ 23727918 (-) True LOC122343107
XM_043237481.1 mRNA upstream 361033 23816849 ~ 23929534 (-) True LOC122343128
XM_043237483.1 mRNA upstream 361082 23816898 ~ 23929534 (-) False LOC122343128
XM_043237254.1 mRNA upstream 751839 24207655 ~ 24220008 (-) True LOC122342994
XM_043237510.1 mRNA upstream 809533 24265349 ~ 24266607 (-) True LOC122343156
TU45768 other downstream 17262 23434980 ~ 23437015 (-) False LOC122342328
TU45110 other downstream 1209117 22128454 ~ 22245160 (-) True G30450
TU45123 other downstream 1237807 22216035 ~ 22216470 (-) True G30457
TU45011 other downstream 1677471 21629617 ~ 21776806 (-) True G30396
TU44977 other downstream 1713947 21737091 ~ 21740330 (-) True G30372
TU45855 other upstream 41313 23497129 ~ 23546369 (-) False G31017
TU45890 other upstream 289670 23745486 ~ 23771768 (-) True G31050
TU45934 other upstream 654408 24110224 ~ 24110673 (-) True G31091
TU46017 other upstream 848280 24304096 ~ 24497596 (-) True G31134
TU45989 other upstream 850685 24306501 ~ 24495178 (-) True G31120

Expression Profile