RNA id: XR_006250682.1


Basic Information

Item Value
RNA id XR_006250682.1
length 3076
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id LOC122343164
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18903235 ~ 18907824 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttggactgGCGCACTGACGTCATGACGCTGCGCCCCACCCCACTGTAATTCGGCTGAGGAAAGATTTGcgtttttaagtatttatagtgttttatcGTTTCGAGACATTTTCTCTCACACTCTTCTGAACTCAGTGCAACTTCAGTGCAAATACTTGGCAAAACGATTCAGTTTCGTTTGGGTTCAGAGCGACGTCGCGCGCTTAAACAACTCACAACTAACTATAACGCGAACGTTTACAACAAACTACAAAATGTTCAGAGGTTTAGTTTGCATTTTCTCATGTCAGTTCTTATCTTAAACAGGACCCGGCGAAACGTGTCACTCTTAAAAAGATGGTGTtcattaaagaggagagtgaagacgtgaagattgaagaaacatgaagaaactgaggaacaaacagACGTGACGTCATAAGAAAGCGCCGCGGACCGGCAAAACAAAGATCTAATGGCACCAAAGGAGGAGAAAGTAGTAGTTAATGAAAACGAAGAGGAAGATCAATATGAGAATCTTCATGATTACCAAACTGGAGAAAAACCATCGTCTCCGACTGAAAAGACGTCCACACGAGAAAGTCCACACGCTTTCAGTTTGAAAGAGTTTCAATCAACAAAACTCTAGAGACCACATGCAAATTCACTCTGGAAAGAAGACCTTCACCTGCGAACAGTGTGGGAAAAGCTTCAGTCAAAAAGCATGCTTTAACAAgcacatgagagttcacaccggagagaaacttTACAAATGCGGAAAGAGTTACGCTCAACAAGGACACCTTGATATTCACACGAGaactcacaccggagagaagcctttcgTATGCCAGTGCTGTAGAAAGAGCTTTTCTCATCAGGGAAACCTAAGCAGTCACATGAGAACTCACACGGGAGGGAATTCTTACATGTGTCTTCAGTGTGGAAGAAGTTTCGGTCAACGTGGATAATCatctattactattactatcatctatcatctatATGCAAGGTGATATGCAAGGTGTTCCCAGTTCTGGTTGAGCTAATTAATGCAACCTAATAATTTGGGCTGCACGATAGTGTGATGTGCACATCTATGTttgaaatttgtttatttttgtaaagcttttcagtactttttgtttgttttgtcatataacagaaatatatatttttctaatattgtGCAGCCCTAGGGGCAAATTTcctttaatagattttaataaCAGAGTATTTAAGTTTAAGACAGGATAAAGAGATGAgtctttaatttagatttaaacaGAAAGAGTGTGTCTGTCTCCTGAAAAATGTTAGGTAGATTGATCCAGGGGGAGCTGAACAGGAAAAAGATCTGCCACCCCCAGATGATTTTGAtgttctaggtattatcaaatgaccAGAGATTTTAAGAACAAGGAATGCAATATGTGCTCACTCGAATACAGAGGtcctaaaccattcagggctttatacgTAATtagcaagattttaaaatgtatacaatgtTTAATAGgaagccagtgcagtgttgacagaaccgggctaatatgatcatacttcccaATTCTAGTAAGAACTCTAACTGCTGCATTTTATAACTTATTTAGCAccaaataatgattaaaataatctaTTACTATTTAGattattacaataatctaaaCTTGAGGTCATGAGCAAATGAATGATCTTTTCTGCATTAAGCATAGGTTATAatttacatctatatatatatatatatatatatatatatatatatatatagatggaaTACTAAGGTTTTGCAAATGCTTGAAACATAGTTTTGAAGGAAATATCAAATTGCATGCCTAGGTTCCAAAATAACTGACAAGAGCAGTGTTATACATTGTACAAGTGTTTTACTACAAGTAAGAAATTAATAGTCATCTAGTTTTTAATGTCTGATTCCATTAGTTTTGCAGATCGGTACGTTTCATTGGGCACCAAAGAAATATGGAGCAGAGTATCATCAGCTTAGCAATGAACGCAGAAACATAGTTTCGAAAGGACTACCATGGCCTATGAACCTCAGATGTTCCACACCAGACTGTGAAGTCACTGTGGTAAAGAAACAAGACATTTCAAATGACAGTacagctttttgttttcattagtggtgcttgcctaaAGCGAATATCACTATTTTGCTATTTTCAAAAGTGAGGTGCACATTTTCGAAAATCTTAGTATAGAACTGATCGCACTTCTAACACCACTAGTAATTTTTTCTAAACCTGATCTCACgattatattgtaaatgtaaatattttcattctaCATAATCACTGTTTCAGAACACAAGAACATTGTTATTTGTATCGAGAACATTTTGGTGTTTTGGCTTAATCGCCAAAACACAACAATAAGAACTTCTTCCAACTTAGTACTTTTAACAGTTAATTCAGTAGCAAATAATACAAGGTACATGTTTCAAATCAACCTTAGTGCTAAATGGGTGTTACTGTACTGTTAAACCGTACATTACACAGTCAGACAAACTTACAAAAgtgataaaaaacacattaaaagtaAGTTAGGGCCAGAGTGCAAGGCAGAACAGAAGAACCAGATACTGGCAGGCTTCGCACCTGAAAGCAAACCTGTGTTTAGGAAAGATGGAGACATGGAAATAAGCAAATTTTAAACCTGTTGTGACAAGCCAGCCCTTAGGCTTGCTCTGAGACGTGACCTGTTTGATGGTGAGCATCTTGAACTTGAACTCAAATTACTGAGCTGTTCAGCTGATGCTGATCTGAAACAGGCCGCAAGTCCATATTCTTCTTGGAAATAATGAAGTACTGTAGAACCCTGCTTCTCTTTCGagaggagggaccacctcgatggcctccttcaGCATTTATTACTTGTTCCAAAACCCGAGCTTGCTCGTGACCCTCCACAGTGTAAATGATCCTGTTAAAACGTGGTTGAGGAGAACCAAACTGATTTCTGTAACCCCTTTCTACATTCTTTTTGGCGGACACTGGGATGTGTACTTACTAGCTATCACTGTGCCCTGAAGCACCTGTTGAATTAAAGAGGCTGGCCAAATGCAATCTTGCCCATGATCT

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43902 lncRNA upstream 87957 18814883 ~ 18815278 (+) True G29633
TU43888 lncRNA upstream 117989 18785045 ~ 18785246 (+) True G29627
TU43851 lncRNA upstream 238152 18662860 ~ 18665083 (+) True G29600
TU43831 lncRNA upstream 299919 18600428 ~ 18603316 (+) True G29591
XR_006250718.1 lncRNA upstream 309119 18591447 ~ 18594116 (+) True LOC122343196
TU44148 lncRNA downstream 24495 18932319 ~ 18932690 (+) True G29777
TU44169 lncRNA downstream 59563 18967387 ~ 18967714 (+) True G29797
TU44175 lncRNA downstream 137886 19045710 ~ 19053414 (+) True G29803
TU44189 lncRNA downstream 171944 19079768 ~ 19080189 (+) True G29809
XR_006250695.1 lncRNA downstream 461947 19369771 ~ 19371889 (+) True LOC122343175
XM_043237394.1 mRNA upstream 5445 18894901 ~ 18897790 (+) True LOC122343078
XM_043237361.1 mRNA upstream 33452 18865853 ~ 18869783 (+) True LOC122343055
XM_043237200.1 mRNA upstream 70642 18823925 ~ 18832593 (+) True LOC122342961
XM_043237281.1 mRNA upstream 88641 18810860 ~ 18814594 (+) True LOC122343011
XM_043237280.1 mRNA upstream 88641 18810860 ~ 18814594 (+) False LOC122343011
XM_043237213.1 mRNA downstream 1092 18908916 ~ 18915022 (+) True LOC122342974
XM_043237355.1 mRNA downstream 10776 18918600 ~ 18922510 (+) False LOC122343048
XM_043237353.1 mRNA downstream 10820 18918644 ~ 18922510 (+) True LOC122343048
XM_043237354.1 mRNA downstream 10820 18918644 ~ 18922510 (+) False LOC122343048
XM_043237417.1 mRNA downstream 25883 18933707 ~ 18937665 (+) True LOC122343092
TU43926 other upstream 16833 18883179 ~ 18886402 (+) True G29642
TU43756 other upstream 441918 18436460 ~ 18461317 (+) True G29545
TU43729 other upstream 602046 18300415 ~ 18301189 (+) True G29526
TU42966 other upstream 2428854 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 2917509 15985219 ~ 15985726 (+) True G28899
TU44195 other downstream 382396 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 823438 19731262 ~ 19786128 (+) False G29835
TU44230 other downstream 837917 19745741 ~ 19747442 (+) False LOC122343071
TU44267 other downstream 1130114 20037938 ~ 20040195 (+) False LOC122343063
unassigned_transcript_309 other downstream 1154830 20062654 ~ 20062727 (+) True trnam-cau_2

Expression Profile