RNA id: XR_006250684.1


Basic Information

Item Value
RNA id XR_006250684.1
length 200
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id LOC122343166
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21126085 ~ 21126420 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgtgtcggtgtgtgtgtgtgtgtgtgtgtgtggaggtgtaAGTGTGCTTTTTACTAAATTCAGCACTGGTGATCACTCCCGTGGGTGACCTCAGCCCTTTACCATTGGAGAGTGCTGCCGGCAGTAGGTGATGAGGATtcaatgtgacttttaaatggtgaaacaattgtgaaaataaattttgtacttTCATGCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44529 lncRNA upstream 7563 21117661 ~ 21118522 (+) True G30056
TU44493 lncRNA upstream 150307 20910154 ~ 20975778 (+) True G30024
XR_006250691.1 lncRNA upstream 153836 20971510 ~ 20972249 (+) True LOC122343171
TU44494 lncRNA upstream 191173 20912558 ~ 20934912 (+) True G30025
TU44456 lncRNA upstream 243177 20880449 ~ 20882908 (+) True G30003
XR_006250727.1 lncRNA downstream 4734 21131154 ~ 21133602 (+) True LOC122343205
XR_006250681.1 lncRNA downstream 37336 21163756 ~ 21167242 (+) True LOC122343163
TU44570 lncRNA downstream 121767 21248187 ~ 21248425 (+) True G30077
TU44588 lncRNA downstream 149690 21276110 ~ 21301007 (+) True G30090
TU44580 lncRNA downstream 185135 21311555 ~ 21337024 (+) True G30085
XM_043237211.1 mRNA upstream 13757 21093453 ~ 21112328 (+) True LOC122342972
XM_043237194.1 mRNA upstream 59235 21055492 ~ 21066850 (+) False LOC122342958
XM_043237195.1 mRNA upstream 59235 21055493 ~ 21066850 (+) False LOC122342958
XM_043237193.1 mRNA upstream 59235 21055494 ~ 21066850 (+) True LOC122342958
XM_043237283.1 mRNA upstream 82067 21039781 ~ 21044018 (+) True LOC122343014
XM_043237398.1 mRNA downstream 29653 21156073 ~ 21161025 (+) False LOC122343080
XM_043237395.1 mRNA downstream 29660 21156080 ~ 21161025 (+) True LOC122343080
XM_043237397.1 mRNA downstream 29660 21156080 ~ 21161025 (+) False LOC122343080
XM_043237396.1 mRNA downstream 29660 21156080 ~ 21161025 (+) False LOC122343080
XM_043236082.1 mRNA downstream 40829 21167249 ~ 21167961 (+) True LOC122342285
TU44410 other upstream 419239 20696672 ~ 20706846 (+) True G29961
TU44357 other upstream 757269 20367675 ~ 20368816 (+) True G29921
XR_006250910.1 other upstream 877856 20248111 ~ 20248229 (+) True LOC122343930
unassigned_transcript_379 other upstream 1018958 20107054 ~ 20107127 (+) True trnam-cau_25
unassigned_transcript_377 other upstream 1019730 20106282 ~ 20106355 (+) True trnam-cau_24
TU44553 other downstream 42829 21169249 ~ 21170595 (+) False LOC122342286
TU44625 other downstream 242223 21368643 ~ 21761178 (+) False LOC122342301
TU44637 other downstream 261773 21388193 ~ 21630120 (+) True G30119
TU44630 other downstream 513120 21639540 ~ 21641756 (+) True G30115
TU44767 other downstream 1105050 22231470 ~ 22231924 (+) True G30218