RNA id: XR_006250695.1


Basic Information

Item Value
RNA id XR_006250695.1
length 397
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC122343175
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 19369771 ~ 19371889 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtgactctctcctgTCAGTTGTATTGTGATCTAATCTCTTGTGATTCTTTGGTCCGTGATGAAGTTCAGCTGATCTGGGTGAATCAGTTTGGTGTGAATCTACAGACAGACTCCAGATATCAGATCTCATTCTCCTCAGAACACTGTAACATCTCTCTGACTACAAAACTCCAGAATGAAGATCTCAACAGAGAGTGGAGATGTGAGGTTACTCAGAGAAATCAACCGAAGACCTCGGTCACGTATACTGTCAAGTATTCAgCTGCAGTCGATTCAACAAAACCGCTCCCAGTCAAGAATAAACCAAGACAAACTACACGACCAGCTGCAGTCGATTCAACAAAACCGATTCCAGTCAGCAGCTCCGAGAAGAAACCAAGACAAACTAAACCAGCA

Function

GO:

id name namespace
GO:0051147 regulation of muscle cell differentiation biological_process
GO:0051149 positive regulation of muscle cell differentiation biological_process
GO:0051153 regulation of striated muscle cell differentiation biological_process
GO:0051155 positive regulation of striated muscle cell differentiation biological_process
GO:0045597 positive regulation of cell differentiation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44189 lncRNA upstream 289582 19079768 ~ 19080189 (+) True G29809
TU44175 lncRNA upstream 316357 19045710 ~ 19053414 (+) True G29803
TU44169 lncRNA upstream 402057 18967387 ~ 18967714 (+) True G29797
TU44148 lncRNA upstream 437081 18932319 ~ 18932690 (+) True G29777
XR_006250682.1 lncRNA upstream 461947 18903235 ~ 18907824 (+) True LOC122343164
XR_006250711.1 lncRNA downstream 34014 19405903 ~ 19406459 (+) True LOC122343189
XR_006250720.1 lncRNA downstream 42572 19414461 ~ 19414983 (+) True LOC122343198
XR_006250725.1 lncRNA downstream 141184 19513073 ~ 19513595 (+) True LOC122343203
TU44214 lncRNA downstream 314968 19686857 ~ 19692608 (+) True G29831
TU44224 lncRNA downstream 359373 19731262 ~ 19786128 (+) True G29835
XM_043236051.1 mRNA upstream 101721 19265355 ~ 19268050 (+) True LOC122342242
XM_043236050.1 mRNA upstream 219136 19147001 ~ 19150635 (+) True LOC122342239
XM_043236049.1 mRNA upstream 301888 19064025 ~ 19067883 (+) True LOC122342238
XM_043236046.1 mRNA upstream 406797 18960662 ~ 18962974 (+) True LOC122342236
XM_043237335.1 mRNA upstream 416172 18950727 ~ 18953599 (+) False LOC122343037
XM_043236055.1 mRNA downstream 73672 19445561 ~ 19449833 (+) True LOC122342246
XM_043236059.1 mRNA downstream 332010 19703899 ~ 19706327 (+) True LOC122342253
XM_043237387.1 mRNA downstream 373845 19745734 ~ 19750074 (+) True LOC122343071
XM_043237388.1 mRNA downstream 373845 19745734 ~ 19750074 (+) False LOC122343071
XM_043237373.1 mRNA downstream 666044 20037933 ~ 20043453 (+) True LOC122343063
TU44195 other upstream 26860 19290220 ~ 19342911 (+) True G29814
TU43926 other upstream 483369 18883179 ~ 18886402 (+) True G29642
TU43756 other upstream 908454 18436460 ~ 18461317 (+) True G29545
TU43729 other upstream 1068582 18300415 ~ 18301189 (+) True G29526
TU42966 other upstream 2895390 16473898 ~ 16474381 (+) True G28982
TU44225 other downstream 359373 19731262 ~ 19786128 (+) False G29835
TU44230 other downstream 373852 19745741 ~ 19747442 (+) False LOC122343071
TU44267 other downstream 666049 20037938 ~ 20040195 (+) False LOC122343063
unassigned_transcript_309 other downstream 690765 20062654 ~ 20062727 (+) True trnam-cau_2
unassigned_transcript_312 other downstream 692673 20064562 ~ 20064635 (+) True trnam-cau_3

Expression Profile