RNA id: XR_006250700.1


Basic Information

Item Value
RNA id XR_006250700.1
length 3535
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id LOC122343179
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21668810 ~ 21673424 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGAAAAGTTATACTCTAGGGTCTACCAAAATTATTCCATTCCCAGTTACTTTGAACCAGAGCAGAGTGAATGTGAGAATGGATGTCACAACacgagaagaagaaaaagaagaaaaaactggTTTAACTTGTTACGTAAAAGCTGTAAAAGCTCAGAGGTGTGGAACACTACAGTTCACAGGACGAAGAAGAAAGATCTGCACACGTTTATCTGAGGCAAAAGGTGGTGAAGGACGATGGCGTCCGTTAAAGAGCTGCTTGTGGACTTACTGAAGGATCTGAAAGAAGCTGAACCAAAGGAGTTTCATTGGTGGTTAAAGAATGGACATCATAAGCCTATATCAAAGTCTGAAATGGAGAAGGCAGATGTATTAGACACAGTAGATAAGATGGTTATGTGTTTTGGACCAGAAGACGCTGTGAAGGTCACGGTAGACATCCTGAGAAAGATGAACCAAAATGATCTGGCTAAACAGTTGCAGAATGACCACAAGTaagctCAGACGGAGGACAATATGAAGACATCTGTCCCTTTTAGAGagatgcaaaatgtcttgaaaactcacaaaaacaacatgaagatgaaggtaaaatacatttttgagggCAACAAAGAAACTGACACAGATCTGAAAGCTGTTTACACAGatctgttcatcacagaggGAGATATGAAAGATGTAAATCAGGAACATGAGATTCTGAAGATTGATGATGCTTTCAAGAgcaaaaaacactgaacaaaacaatcaaatgcaatgatatatttactgaactGAGGAAAAACAATGAGTTAAAGATTGTGTTGACCAAAggagtcgctggcattggaaaaactgtgtctgtgcacaagttcatcctggactgggccGAAGGAGAATCTAATCAGGATATAGACTGTGTGTTCCTgcttccattcagagagatCAATGTgattaaagagagagaggtcaGTCTCCATGAGTTTCTGCTGAAATTTAATCCTGAATTGAAGGACCTGGAGAAATCAAAGTTATAAActtgtgtttatatttgatggacttgatgagAGTGGACTGCCTTTGAATTTTGAAAGTGATACATTGAACACTGTTGAGGAAAGATCATCTGTGGATGTGCTGTTTACAAGTCTGGTCAAAGGTAAACTGCTTCCATCAGCTCTGGTCTGGGTCACATcacgaccagcagcagccaatcagatccctccTCAGTATGTAGGTTTGTTCACAGAGGTGCGAGGATTCACTGACCTACAGAAGGAGGAGTACTTCAGAAAGAGATTCACAGATGAGAGTCTGTcctccagaatcatctcacacattaagACGTCTCATAgtctctacatcatgtgccacattcctgtgttctgctggatttcagccacagtacttcaggatattttcactgagaacaatgaagagaacatcagcacaacactcactgaaatgtacattcactcCCTGCTGATAcagatgaacataaaaaaacagaaatacaatgAACAAGAAGAAAGAGAATGTTCAGAGCACttacttttaaatagaaagatGATTCTGAAGTTAGCCAAGCTAGCGTTTGAACAGCTGAAGCAGGGAAACATTGTGTTCTATGAGAAACATCTGAAACCATGTAGTATTGATGTGAGTAAAGATGCTGAGTTCACAGGAATGATCGCTGAGATCTTTAAGAAGGAAGTTGGACTTTATTAGACAAAGGTCTTCTGCTTTGTGCATCTGGGTGTTCAAGAGTTCCTCGCTGCAGTGCATGTGTTCACCTGTTacctgaaaaaaacaagcaagagcTTACGTTTTTCTTTGAGGATTCACAAACTACAGTCATACAAAATCTTACATTTCCTTTTAGAAAGGTCAAATTGCATGACTTAACAGAGAGAGCAATTGAAAAAGCAATGCAGAGTAAGAGAGGGCATCTGGACCTGTTCCTGCGGTTTCTGATGGGAATTTCACTGGAATCCAGTCAAGTATAAGTttaataagtttatttaaaaacattttacagtcttAGACGGGACAGGATATATAGTCTATACAGTACAAATGTACCGTTTCTACGGAATCTACCTTGatgtatgtgactttttttctttcagacaatTCCAATCAAATTCAATTGTCCTAGTCCCTCCAAGTCTTTCCATTGTATTTATCATGTGGTAGCTTTTAACAGTTCAGAACACATAACGTATTAGTAATGACTTCCCTCAATTGGCTCTTGGGGGGTTGAACCACCCGCCCACTAAAATTATAGAGATTAAAAATGCCAGTTaaattttttgtctaaaaaggaaaaaaatcccatacacctaggatgcttcaaaagtatgaaaaacatctaattttcatttagaattttcAAGGGTGGACTAACCCTTTAAGCATGTTCAACTACAGAGACAATCAGTGATGAACCCACCACTTGTATATAGtctgtatataatatgtatataattatcgTGTTAAACTTGTATAGATTTTCtacatgtaatctcactgcacagtGTGCAATATCGCAGAagatataatatcataattgttgttttaatgatgtgagATTTGAAATGATCTAGTAGTTTTGCAAAACACACCCTCAGAGTGTGAAGTCTAGACTAGTGAGTGTGCACATTTAGAGTGATTTTCTTTACTGCTtgattctatttaataaaatacatttagaatgatCACAAATTAAAGACATGCAGGCAGACAATTTCATATAGTTAATTACCATGATGTAACAATTTAGTTCACTGAAGATGAGCATAGTGAGAACtcatgtgcagttttatttacagagatATAATCCATAATCTAAACAAACGAATACTTGACTTGAAACACACTTGCCTGAAAAATGAATAGACTTGACTTGGAATAGACTTGGCATGAACAGGATAGATTCATTGACAGCAGGTTCCCTGATAACAAATGCACATCTCAGAGACGTCAAATAGACGTCTGCATTTATATCTTCAAGGcatagtttttttgtgtatttgcttATCTGAGCCACTggcctctgcttcctcagtggaaCATGCTGGAAGAAGAAAATTGGTGAAATTGAGGAGATCCTTCTCCAGTATTGAGGTATTCCTTCCACCATCCGACAATATTCCCAGTCGAAGTCAGCAGATTTCCACCTTCACTTAAATTTGGCAATATGGGAGTGCTTCCCACAAGCTGTTTAACTATTTTAGATTCACAAACTAGAATAAAACAGTCCAGTGATTTATCAGTAAGATTGgcgttttagaaaaaaaataataataatgtttttattaattaaaaaatgtattaaaatgtagaaccaataatgaatatgcattgtgaatagataataatagacaactaaatatgaagaaagatggcaaagaatttgtagaaacaaatagagtgaagacagaatgtCTCTCCTAGGACCACAACCTTaatgtggtggaggggtttgagtgcctcaGTGGCCCTAGGAGCTATGTTGGCCGGGGCTATATggccctggtagggtctcccaaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45029 lncRNA downstream 168812 21499638 ~ 21499998 (-) True G30408
TU45027 lncRNA downstream 175903 21492264 ~ 21492907 (-) True G30406
TU44981 lncRNA downstream 389767 21276222 ~ 21279043 (-) True LOC122343113
TU44930 lncRNA downstream 542739 21117815 ~ 21126071 (-) True G30343
TU44875 lncRNA downstream 600622 21065914 ~ 21068188 (-) True G30301
TU45062 lncRNA upstream 299 21673723 ~ 21676131 (-) True G30425
TU45059 lncRNA upstream 3452 21676876 ~ 21809618 (-) True G30423
TU45070 lncRNA upstream 96155 21769579 ~ 21772200 (-) False LOC122342302
TU45132 lncRNA upstream 607248 22280672 ~ 22281189 (-) True G30465
TU45173 lncRNA upstream 685793 22359217 ~ 22421953 (-) True G30499
XM_043237332.1 mRNA downstream 5977 21655902 ~ 21662833 (-) False LOC122343036
XM_043237331.1 mRNA downstream 5977 21655902 ~ 21662833 (-) True LOC122343036
XM_043237330.1 mRNA downstream 5981 21655902 ~ 21662829 (-) False LOC122343036
XM_043237333.1 mRNA downstream 5989 21655902 ~ 21662821 (-) False LOC122343036
XM_043237426.1 mRNA downstream 14813 21651364 ~ 21653997 (-) False LOC122343099
XM_043236095.1 mRNA upstream 41255 21714679 ~ 21736541 (-) True LOC122342300
XM_043236098.1 mRNA upstream 95700 21769124 ~ 21772399 (-) True LOC122342302
XM_043236099.1 mRNA upstream 101674 21775098 ~ 21780619 (-) True LOC122342303
XM_043236101.1 mRNA upstream 173696 21847120 ~ 21860284 (-) True LOC122342306
XM_043237440.1 mRNA upstream 196991 21870415 ~ 21878772 (-) False LOC122343106
TU45006 other downstream 282373 21383469 ~ 21386437 (-) True G30395
TU45009 other downstream 282832 21383469 ~ 21385978 (-) False G30395
TU44972 other downstream 338717 21327716 ~ 21330093 (-) True LOC122343135
TU44338 other downstream 1386410 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 1430256 20237137 ~ 20238554 (-) True G29902
TU44977 other upstream 63667 21737091 ~ 21740330 (-) True G30372
TU45110 other upstream 455030 22128454 ~ 22245160 (-) True G30450
TU45123 other upstream 542611 22216035 ~ 22216470 (-) True G30457
TU45768 other upstream 1761556 23434980 ~ 23437015 (-) False LOC122342328
TU45855 other upstream 1823705 23497129 ~ 23546369 (-) False G31017

Expression Profile