RNA id: XR_006250712.1



Basic Information


Item Value
RNA id XR_006250712.1
length 418
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id LOC122343190
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23494326 ~ 23496751 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GTTAACACTTCTCTCAGAGCAAATCAGGGCTtaaagcaagaccccagtctatCGTCACAAAATACGTAActcgtagtgactgacagataggAAACACCATCTCAACTTCTCTGAAGAGCTCCTTAGGTGCATGCAAATATCTAATCCCGGTCTATTAGGGTAGggatggaccaatcacagtcgAGTAGGGTCGagatggaccaatcacagtcgATTAGGGTCGggatggaccaatcacagtcCGGATGGTGTTCTCGGCGTCTACACTCAGTTTTGATTTAGTCTCCTGAAAAACGAAGCACAACTTTCTGAAGCACAGCTTCTGTCTTATCGTCCGTAGGAGGATGTCTCAGACGGTCATACCGTGGCGTCTTCAACCCTCGTCATCCAGCTGCAGCCGACGACGCACACCGCCGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45850 lncRNA downstream 437 23478525 ~ 23493889 (-) True G31017
TU45851 lncRNA downstream 4388 23486614 ~ 23489938 (-) False G31017
TU45864 lncRNA downstream 19503 23474255 ~ 23474823 (-) True G31024
TU45858 lncRNA downstream 22575 23458727 ~ 23471751 (-) True G31020
XR_006250676.1 lncRNA downstream 38510 23454277 ~ 23455816 (-) True LOC122343160
XR_006250704.1 lncRNA upstream 177375 23674126 ~ 23675958 (-) False LOC122343181
XR_006250703.1 lncRNA upstream 177375 23674126 ~ 23675868 (-) True LOC122343181
TU45886 lncRNA upstream 177394 23674145 ~ 23675795 (-) False LOC122343181
XR_006250723.1 lncRNA upstream 231284 23728035 ~ 23731996 (-) True LOC122343201
XR_006250716.1 lncRNA upstream 236002 23732753 ~ 23743520 (-) True LOC122343194
XM_043236117.1 mRNA downstream 58801 23416891 ~ 23435525 (-) True LOC122342328
XM_043237389.1 mRNA downstream 235007 23256365 ~ 23259319 (-) False LOC122343073
XM_043237390.1 mRNA downstream 235007 23256365 ~ 23259319 (-) True LOC122343073
XM_043236116.1 mRNA downstream 243712 23240075 ~ 23250614 (-) True LOC122342325
XM_043236115.1 mRNA downstream 257246 23230042 ~ 23237080 (-) True LOC122342324
XM_043237441.1 mRNA upstream 229001 23725752 ~ 23727918 (-) True LOC122343107
XM_043237481.1 mRNA upstream 320098 23816849 ~ 23929534 (-) True LOC122343128
XM_043237483.1 mRNA upstream 320147 23816898 ~ 23929534 (-) False LOC122343128
XM_043237254.1 mRNA upstream 710904 24207655 ~ 24220008 (-) True LOC122342994
XM_043237510.1 mRNA upstream 768598 24265349 ~ 24266607 (-) True LOC122343156
TU45768 other downstream 57311 23434980 ~ 23437015 (-) False LOC122342328
TU45110 other downstream 1249166 22128454 ~ 22245160 (-) True G30450
TU45123 other downstream 1277856 22216035 ~ 22216470 (-) True G30457
TU45011 other downstream 1717520 21629617 ~ 21776806 (-) True G30396
TU45855 other upstream 378 23497129 ~ 23546369 (-) False G31017
TU45890 other upstream 248735 23745486 ~ 23771768 (-) True G31050
TU45934 other upstream 613473 24110224 ~ 24110673 (-) True G31091
TU46017 other upstream 807345 24304096 ~ 24497596 (-) True G31134
TU45989 other upstream 809750 24306501 ~ 24495178 (-) True G31120

Expression Profile