RNA id: XR_006250715.1


Basic Information

Item Value
RNA id XR_006250715.1
length 586
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC122343193
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22540384 ~ 22541485 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTGTTGATTGCACCAGTATTTGACAAGCAGCTTTTTGAGACAAACACTGAAGTCAAGCATAAGGACGTTCGTTGTGACAGTGAGACCttcaggcaggcagacagagcCATGATCAGAGCTAGAGTTCCACAGTTCCACAGTCGGGCGACGCTCTCCTCCTCCTACGATGGAAGAAGTCTTACAGCGGCTTACCAAGGTTAGCATCCACCAGAAGCAAATTATGGAGCATCTGGCTACACGCCAAGGGGAGGCAGAGCGCTTCCTGACCCCCGTGTGCAGGCCACCCGGTCACGGCCCAAGATGACTGTACATGACATGACATAGAGGCCTACTTCCAAATGTTTGAGTGCACACTTGAAAACAAAGCCCATGGATTTTGATTGCGTCTCTCGCATAGTCTGACAAAggagtataatttaaaaattgtgcAGTCAACTGATTGTGAAATGGAACTTTATGCTGATTTATCCTACCTCTATCATTCAGCACAAAtccaaatatttcataatgttttcatatttgcaatacaacaataaagcagacttgactatttgaatacattttgtaaattaaaggTACTGTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45207 lncRNA upstream 7352 22532415 ~ 22533032 (+) True G30528
TU45205 lncRNA upstream 34192 22505255 ~ 22506192 (+) True G30526
XR_006250708.1 lncRNA upstream 120692 22417927 ~ 22419692 (+) True LOC122343186
TU45148 lncRNA upstream 195570 22340162 ~ 22344814 (+) True G30480
XR_006250710.1 lncRNA upstream 228964 22306795 ~ 22311420 (+) True LOC122343188
XR_006250689.1 lncRNA downstream 1026 22542511 ~ 22543831 (+) True LOC122343169
XR_006250726.1 lncRNA downstream 8616 22550101 ~ 22551350 (+) True LOC122343204
TU45301 lncRNA downstream 262553 22804038 ~ 23246017 (+) True G30598
TU45303 lncRNA downstream 266503 22807988 ~ 23249868 (+) True G30599
TU45312 lncRNA downstream 311996 22853481 ~ 22869703 (+) True G30607
XM_043237291.1 mRNA upstream 94106 22434054 ~ 22446278 (+) False LOC122343018
XM_043237290.1 mRNA upstream 94106 22434059 ~ 22446278 (+) True LOC122343018
XM_043236104.1 mRNA upstream 134562 22404053 ~ 22405822 (+) True LOC122342312
XM_043236103.1 mRNA upstream 235236 22296897 ~ 22305148 (+) True LOC122342310
XM_043237344.1 mRNA upstream 432927 22105236 ~ 22107457 (+) True LOC122343041
XM_043237494.1 mRNA downstream 7132 22548617 ~ 22561763 (+) True LOC122343138
XM_043237204.1 mRNA downstream 71630 22613115 ~ 22621886 (+) True LOC122342965
XM_043237292.1 mRNA downstream 120341 22661826 ~ 22673771 (+) True LOC122343019
XM_043237429.1 mRNA downstream 144217 22685702 ~ 22689679 (+) False LOC122343101
XM_043237428.1 mRNA downstream 144255 22685740 ~ 22689679 (+) True LOC122343101
TU44785 other upstream 238865 22296897 ~ 22301519 (+) False LOC122342310
TU44767 other upstream 308460 22231470 ~ 22231924 (+) True G30218
TU44625 other upstream 779206 21368643 ~ 21761178 (+) False LOC122342301
XR_006250667.1 other downstream 120341 22661826 ~ 22682712 (+) False LOC122343019
TU45293 other downstream 236557 22778042 ~ 22779597 (+) False LOC122342317
TU45355 other downstream 587621 23129106 ~ 23130189 (+) True G30636
TU45351 other downstream 616074 23157559 ~ 23159756 (+) True G30632
TU45341 other downstream 622284 23163769 ~ 23167257 (+) False LOC122342321

Expression Profile