RNA id: XR_006250718.1


Basic Information

Item Value
RNA id XR_006250718.1
length 2154
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC122343196
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18591447 ~ 18594116 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATGGCTGCGCCGCACTGCTGCATCTGATTCTCCTGAagaaaaAAAAACCGATGTAAAGCGACCGATGTCCACGGCGACACGCTATTGTAAAGATGacgtttattaaagaggagagtgaagatGTGAAGATCAAAGAAACGTTTGGAATAAAACACGAAGAGATTACGGAACCAGCAGaattttgcTGCACTGCTTGATGTGGCCGTGGGACAGGCAGCGACAAACTGTTTGAGGACCTTAGGGGCCTAGAACATTTGCAGTGGACAAGAAGATCAGAGAAGTACTGTGGAGCCTGGCTATTTAGCCCCATATACACTTGCAATGAAACCAAGTCAAACACAGTATTCAACCGGCAGCCAATGAAGAGAAGCTGGAACGGGTGTATATCGCCGCGTTCTTGCGAGGCACATCAGATCTCGCTTGTGCCACAAAATCTTGTCACAACGAATTTGATGAAGTTTGTGCAAAAATGGATTTGAGGTTTCAATGCGAGGCTGGGCAACTCTGGGTCACTGTCTGCAGAGACCAAACTTGGTATATTATGAAAAGCATGAAAGCATGAGGGTACAGCACCACCTACTGGtcaaaagatatataaaatgtacatttccgTTCATAACCTCTGACCAGTCTGGCTAAAAATCATAAGATCGGCCATGTAGATATGAAATGGTATACTGAATTGAACGATACCTAATTTTCCAAATTGTGAGTTTATAGTAAAATATCCGTCAACAAATGTTTCTCGGGGGGCCTCCTGCTCATGGAGAGCTGTAGAGTTCAGCTTCAGACACAATCCAGTATATCTGAGCCAGATAATCAAGATATTCAGGGCTGCTTAATTACTAACAGGTGTGTTGAAGCAGGGTTGAAAcgtaaaggtgctgtatgtatgATTGACACCCAGTGGTTGAACTAGATATTGCAGTCCAaacctaaaatattattttttttacccagcCCCTGCTATTTAGTCTTGACGCACCCGCATGTTGCCAGATTCCCGCTCAGACCCATTTCGtttgccagcttccatgactgaaatgaaatttcAGGTCTGTTATCTGCCAACTGCCAACCCGTGGTTACGAAACAACTTAGCATACACCTGCAAACTGTGTGGGAAGACCTTCTCGCAAAGAGGAAATCTGAAGacttcacaccggagagaggccattcatttgttcatttgtggCCAGTGTGGAAAAAGGTTCAGAGGTAAAGTTAACCTCAATTACCACATAAGGATTCACTCAAGACAGAACCGTTTTCAGTGTGGGAGAAGTTTCGCAGACAGGAAACACTTTAAGAAACACGCGATGACTTGCACTGTAGACAAGTTCTCATGTCCTCAGTGTAAAAAGAGTTTTGCGTATCAATAAGACCTGAGACATGGAAAGAAAGTGCAGTATtcaggcatttttttttaaaaaattagtgatttcaaaaacgtaaaaatacacataaaaagtCACGCAGATGTGAGACGTTATTTGTGTTCTTTGTGTGGGAAGAGTTTTAAATGGCTCAGCAATTTGAAATGGCACCAGAAAACGCGTATCTGTGCGAAATTAAGACTTCGGTAAGACTGCAGCTGATTGACCACCTTCACGATCATTTGCATCATTCACCTCCGTATACTAAAagagactttttatttttatgttgtatatacatataaggTACAAATTGTATGGTGGCGATGGTTCATTACATCTATCGAAACCTTAAAATCAAAGTTAAAAGGCTTATCGGATGCCCATTTTCCACAAATTGATATGATTCTTTgtggtcttaatgaaaagtctataacatTGGTAACTTGGTTAAAATTTGGATTTACTGACAAGATGCGCATGAATATATCGATCGCTATATCTCGCCCAGCCTTTAAGATGGAAATAAAGAACGAATGCTGTAATTCTTGACCTCGAGATCCACTTTCCTGCAGAATTTAACTCCAATCCTAATCGAATGCACATGAACAAACTAATCAAGATCTTCAGGATTACTACAGTTGCAGGTAGGTTTGTTTAATCCAGGTTGGAGATAATCTCTGAAGTAAAGTGGATTGGTTCTTGTGGAAGTGGAAGACCCCTGCTGTAACTTTAAGGGCTACTGTACAAACGTGACAACAACTTCCATGTAAGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43761 lncRNA upstream 125610 18441631 ~ 18465837 (+) True G29548
TU43755 lncRNA upstream 130852 18435643 ~ 18460595 (+) True G29544
TU43674 lncRNA upstream 530531 18059335 ~ 18060916 (+) True G29484
TU43659 lncRNA upstream 588968 17999597 ~ 18002479 (+) True G29476
TU43661 lncRNA upstream 590207 17999597 ~ 18001240 (+) False G29476
TU43831 lncRNA downstream 6312 18600428 ~ 18603316 (+) True G29591
TU43851 lncRNA downstream 68744 18662860 ~ 18665083 (+) True G29600
TU43888 lncRNA downstream 190929 18785045 ~ 18785246 (+) True G29627
TU43902 lncRNA downstream 220767 18814883 ~ 18815278 (+) True G29633
XR_006250682.1 lncRNA downstream 309119 18903235 ~ 18907824 (+) True LOC122343164
XM_043237231.1 mRNA upstream 26081 18556569 ~ 18565366 (+) True trim24
XM_043237233.1 mRNA upstream 26081 18556569 ~ 18565366 (+) False trim24
XM_043237232.1 mRNA upstream 26081 18556571 ~ 18565366 (+) False trim24
XM_043237471.1 mRNA upstream 37058 18547531 ~ 18554389 (+) True rab21
XM_043237485.1 mRNA upstream 369127 18218716 ~ 18222320 (+) True LOC122343129
XM_043237271.1 mRNA downstream 25435 18619551 ~ 18622911 (+) False LOC122343002
XM_043237268.1 mRNA downstream 25826 18619942 ~ 18627271 (+) False LOC122343002
XM_043237267.1 mRNA downstream 28148 18622264 ~ 18627271 (+) True LOC122343002
XM_043237270.1 mRNA downstream 28905 18623021 ~ 18627271 (+) False LOC122343002
XM_043237265.1 mRNA downstream 33309 18627425 ~ 18632437 (+) True LOC122343000
TU43756 other upstream 130130 18436460 ~ 18461317 (+) True G29545
TU43729 other upstream 290258 18300415 ~ 18301189 (+) True G29526
TU42966 other upstream 2117066 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 2605721 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 2749592 15841372 ~ 15841855 (+) True G28891
TU43926 other downstream 289063 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 696104 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 1137146 19731262 ~ 19786128 (+) False G29835
TU44230 other downstream 1151625 19745741 ~ 19747442 (+) False LOC122343071
TU44267 other downstream 1443822 20037938 ~ 20040195 (+) False LOC122343063

Expression Profile