RNA id: XR_006250719.1


Basic Information

Item Value
RNA id XR_006250719.1
length 1425
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id LOC122343197
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18737815 ~ 18740781 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttcttttcattcctcAAACTGTTGCCAGAGTTATTGCTGGGAAATTTGCCTCTCATTTGTTAGATTTTCATGtcgtttttatgttattttaaactaaattattacGTTGTTTAGAAACCATTTTATTCgaatttaatttaaccaaaattatttaaatgcacattctCATTATCTTTAAATGTATCAATCTTATTATTTAGACACATGATAACTGTTGCTTAGTGTGTTGTTAAATGCTTTCTTAACATGTACCTGCTGTAATTCATGATTAAGTCGGCTAGTTATAAACAGCTTCcatctgtttttgtgagctCGTCTAAAGTGAGGACTATTTGTCACGTTTCGTTGTTTCTCGGGAGAGGAAGCACTCGAGAcgcaaataaacttaaatagatttaatccaaaactggtaaaataaatatacaaaggcaggcagaacaaaaaaccACAAGTAGGTAACCTCGGGAACGTATAGACATCGAAtggacattgacgatcggacaaccGGAATACagacacaggacttaaatacacaagCCATTCCAGGCCACCAGAGGCATCTTACAGCAGTGAGAGTTTTATTGGTCCCAGGATGACCAGTGCTCAGTGAGTCTATGGACCAGGAGTGGGGCTGATATGAAGACCGTTTGAAGAATTTCCATGACTGACGTGGCTTCGGTTGTCAATGGTGCAGTCATGAAACTGTAACTGTAAATTAACAGTTTGCAGAAGTTGGAAAATCTCAGTATTCAATGGAGCTGTTTGATCGTAGTGGCCAGTGGGCATCACAAAGACAGCTTTCAATTTCGTCCACCCTTCCGGATGAGGTTATATGCACTTCTGAGGTCCAACTTGGTGAAGATCCTGGCACTTCTTAGccacaaagaaaaaatggaAGCAGCAGAAGTGGACAGATGGATGTAGCCTTGTTGTAATACCTCCTCATTGTATTCCTCCATGGCCTTTAGTTCTGGGATCAAAATGGAGTAGATATTACCTTTGGGTACTAAATCATTGGGTAGGAGTTTGAACTTAACTTTAACTTGAACATACATGTCAAGTTTGCCATAAGTGTGAGAGTTAAAATGGTGAGCATTTCTACTGCAGGTTAAGACCATAAtgtctttataaaataaagaaatctagTTCTATCTGTAGATGAGTAGAATTAGGAGGGCTGTTGATAATGTCCTgaacttaattaattaattaattccaaGTACACTCAAGGAATTGTTTCAGTAGTATAGTACGGCTATAGTCCATAAATGCAAAGAGGTAGCAACATACTTGTGCAAGAGCTACAGGAAACAAGgggaaaaacatcaaataaactTAGTAAACTAAGCAAGCCCCTTTTCACTTGTCCAAAACAACTGATACAACCAATGATCATTAAACTTATGTTTGAgcaggaaataaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44075 lncRNA downstream 25712 18711748 ~ 18712103 (-) True G29720
TU43989 lncRNA downstream 173370 18563154 ~ 18564445 (-) True G29682
TU43983 lncRNA downstream 178534 18556624 ~ 18559281 (-) True G29680
TU43984 lncRNA downstream 179547 18556500 ~ 18558268 (-) False G29680
TU44083 lncRNA upstream 3820 18744601 ~ 18747308 (-) True G29726
TU44096 lncRNA upstream 42824 18783605 ~ 18783915 (-) True G29736
TU44098 lncRNA upstream 45415 18786196 ~ 18786692 (-) True G29738
TU44101 lncRNA upstream 60123 18800904 ~ 18806668 (-) True G29741
TU44114 lncRNA upstream 116693 18857474 ~ 18857721 (-) True G29753
XM_043237165.1 mRNA downstream 2217 18693002 ~ 18735598 (-) False LOC122342944
XM_043237162.1 mRNA downstream 2218 18693002 ~ 18735597 (-) False LOC122342944
XM_043237164.1 mRNA downstream 2218 18693002 ~ 18735597 (-) False LOC122342944
XM_043237167.1 mRNA downstream 2218 18693002 ~ 18735597 (-) False LOC122342944
XM_043237163.1 mRNA downstream 2218 18693002 ~ 18735597 (-) False LOC122342944
XM_043237235.1 mRNA upstream 95837 18836618 ~ 18840716 (-) True LOC122342979
XM_043237215.1 mRNA upstream 103166 18843947 ~ 18852626 (-) True LOC122342975
XM_043237400.1 mRNA upstream 158026 18898807 ~ 18902552 (-) False LOC122343082
XM_043237399.1 mRNA upstream 158026 18898807 ~ 18902498 (-) True LOC122343082
XM_043237486.1 mRNA upstream 175545 18916326 ~ 18917533 (-) False LOC122343130
TU44045 other downstream 2175 18724825 ~ 18735640 (-) False LOC122342944
XR_006250671.1 other downstream 76162 18656980 ~ 18661653 (-) True LOC122343054
XR_006250670.1 other downstream 76166 18656980 ~ 18661649 (-) False LOC122343054
TU43941 other downstream 309472 18408560 ~ 18428343 (-) True G29653
TU43653 other downstream 757893 17970605 ~ 17979922 (-) True G29473
TU44133 other upstream 159784 18900565 ~ 18902548 (-) False LOC122343082
XR_006250672.1 other upstream 175545 18916326 ~ 18917533 (-) True LOC122343130
TU44159 other upstream 190755 18931536 ~ 18931875 (-) True G29787
unassigned_transcript_306 other upstream 1319808 20060589 ~ 20060671 (-) True trnal-aag
unassigned_transcript_307 other upstream 1320571 20061352 ~ 20061432 (-) True trnal-cag

Expression Profile