RNA id: XR_006250725.1


Basic Information

Item Value
RNA id XR_006250725.1
length 371
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC122343203
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 19513073 ~ 19513595 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGCGAGTTCCAGCTTCGCCGACTCCACATTTGTGACAGCTGTGGCTTTCAGAGGAGCTTCAGAGAGGACTCCAACTACCTCTCACTGATCAGTCCTCAAAGAATCCTCACTGACAACCTGCGGCAATACTTCAAAGCATCTTCATTTGAATGCTCCTGCAGTGAGTGTCTCATCTGGGCAGCAGTTAGTATTGTGGTAAGAGATTCTTCCCGTTGTTTTATTGACTTAGTCACTCATTCAGCATCAGACTAAAGTTGGTCTCTCCTGGAATGCAGTGACACCAGTATCAAAAGAACCAGATGGtcaaaatcaacccttaactttgtcctatagtccagccctactcagtacccagcaaattcagttacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250720.1 lncRNA upstream 98090 19414461 ~ 19414983 (+) True LOC122343198
XR_006250711.1 lncRNA upstream 106614 19405903 ~ 19406459 (+) True LOC122343189
XR_006250695.1 lncRNA upstream 141184 19369771 ~ 19371889 (+) True LOC122343175
TU44189 lncRNA upstream 432884 19079768 ~ 19080189 (+) True G29809
TU44175 lncRNA upstream 459659 19045710 ~ 19053414 (+) True G29803
TU44214 lncRNA downstream 173262 19686857 ~ 19692608 (+) True G29831
TU44224 lncRNA downstream 217667 19731262 ~ 19786128 (+) True G29835
TU44237 lncRNA downstream 356825 19870420 ~ 19870915 (+) True G29844
TU44244 lncRNA downstream 464725 19978320 ~ 19978626 (+) True G29850
TU44246 lncRNA downstream 466894 19980489 ~ 19980723 (+) True G29852
XM_043236055.1 mRNA upstream 63240 19445561 ~ 19449833 (+) True LOC122342246
XM_043236051.1 mRNA upstream 245023 19265355 ~ 19268050 (+) True LOC122342242
XM_043236050.1 mRNA upstream 362438 19147001 ~ 19150635 (+) True LOC122342239
XM_043236049.1 mRNA upstream 445190 19064025 ~ 19067883 (+) True LOC122342238
XM_043236046.1 mRNA upstream 550099 18960662 ~ 18962974 (+) True LOC122342236
XM_043236059.1 mRNA downstream 190304 19703899 ~ 19706327 (+) True LOC122342253
XM_043237387.1 mRNA downstream 232139 19745734 ~ 19750074 (+) True LOC122343071
XM_043237388.1 mRNA downstream 232139 19745734 ~ 19750074 (+) False LOC122343071
XM_043237373.1 mRNA downstream 524338 20037933 ~ 20043453 (+) True LOC122343063
XM_043236062.1 mRNA downstream 530160 20043755 ~ 20045999 (+) True LOC122342262
TU44195 other upstream 170162 19290220 ~ 19342911 (+) True G29814
TU43926 other upstream 626671 18883179 ~ 18886402 (+) True G29642
TU43756 other upstream 1051756 18436460 ~ 18461317 (+) True G29545
TU43729 other upstream 1211884 18300415 ~ 18301189 (+) True G29526
TU42966 other upstream 3038692 16473898 ~ 16474381 (+) True G28982
TU44225 other downstream 217667 19731262 ~ 19786128 (+) False G29835
TU44230 other downstream 232146 19745741 ~ 19747442 (+) False LOC122343071
TU44267 other downstream 524343 20037938 ~ 20040195 (+) False LOC122343063
unassigned_transcript_309 other downstream 549059 20062654 ~ 20062727 (+) True trnam-cau_2
unassigned_transcript_312 other downstream 550967 20064562 ~ 20064635 (+) True trnam-cau_3