RNA id: XR_006250728.1


Basic Information

Item Value
RNA id XR_006250728.1
length 845
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id LOC122343214
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16698521 ~ 16700218 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTGACAAAAGCGGCAGAAGAGTTGGAGAGTCAGCTGGAGGGAGATGCTCAAGCCACTTTGGCTGGAATTCAGAAAATAAAAGAGGAGTCCCTTGCCTTTGAAGAAATGCTGCGTACTGCGACAGACATCGCCACTCGACTGGAGAGCTCCTCACGAACCCTGCATGTGGAGATGATCGAACAGCTGAGGAAAAACACGAGACAGCCGCGCAAAGCTAAATGACAGGAAAAACAGATAAAAGTGTTATATGGCAtgtcacattaatatttatccacaaacagtaaaacaatgTTGTCACCTTCAACAGTCCATATGTGGACCAATTgactgcattttatattttatgtttttaaaggcaCTTTTATGCAGAGAATAGACAGAAATGCAAACTATATTTTTCTGTCTCGTTCGATGTTCATTTGCGAGCCATAATGAAGACATAATGGCATTGTGTacaaggaaattaaaaaaaaaaaaaaaatcttggcaGTGAGGTGACATCTTAAAAGAATATTCTCTTTCCAAGCACAGACAACCCCGCAGCTATGGTCTGGCTGTCTTGGCGCTAGGGAGCAGATGGTGAAAAGACTGTGTGAGGGTCTGGAAATCAGCAGCATGAACTCTTAtgtgctggagagagagagagagagagcaagatggaaaagaaagaaaggaagtgatgtcactaagaaaaaaatttaaacgtGACTAAAAGAGTCAGAAGAAAAAAGAATCCAATGTCTTTGGGACTAaagaatgttattttgaaatatgttgtGATTACTCGAGTCTAtgattaaaatatactgtaagtatactattaaaatataagtgtaTAACTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43008 lncRNA upstream 88517 16609724 ~ 16610004 (+) True G29011
TU42977 lncRNA upstream 158361 16519411 ~ 16540160 (+) True G28991
TU42969 lncRNA upstream 223188 16474743 ~ 16475333 (+) True G28985
TU42953 lncRNA upstream 233831 16464445 ~ 16464690 (+) True G28969
XR_006250607.1 lncRNA upstream 236995 16457699 ~ 16461526 (+) False LOC122342600
TU43024 lncRNA downstream 48500 16748718 ~ 16752589 (+) True G29026
XR_006250658.1 lncRNA downstream 197297 16897515 ~ 16911342 (+) True LOC122342883
XR_006250659.1 lncRNA downstream 197297 16897515 ~ 16911342 (+) False LOC122342883
TU43090 lncRNA downstream 240798 16941016 ~ 16941310 (+) True G29078
TU43099 lncRNA downstream 337055 17037273 ~ 17038220 (+) True G29086
XM_043236038.1 mRNA upstream 81303 16615345 ~ 16617218 (+) True LOC122342226
XM_043236529.1 mRNA upstream 241224 16436391 ~ 16457297 (+) True ptprb
XM_043236532.1 mRNA upstream 271335 16398632 ~ 16427186 (+) True LOC122342594
XM_043236530.1 mRNA upstream 271335 16400881 ~ 16427186 (+) False LOC122342594
XM_043236542.1 mRNA upstream 300022 16378638 ~ 16398499 (+) False LOC122342597
XM_043237522.1 mRNA downstream 825 16701043 ~ 16710156 (+) True chrna2b
XM_043237523.1 mRNA downstream 825 16701043 ~ 16710156 (+) False chrna2b
XM_043237784.1 mRNA downstream 121895 16822113 ~ 16838424 (+) True rhoj
XM_043237031.1 mRNA downstream 224799 16925017 ~ 16932206 (+) True six4b
XM_043236321.1 mRNA downstream 237581 16937799 ~ 16939687 (+) True six1b
TU42966 other upstream 224140 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 712795 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 856666 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 1043340 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 1142839 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 1600197 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 1736242 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 2182961 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 2590002 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 3031044 19731262 ~ 19786128 (+) False G29835

Expression Profile