RNA id: XR_006250751.1


Basic Information

Item Value
RNA id XR_006250751.1
length 796
lncRNA type inter_gene
GC content 0.47
exon number 6
gene id LOC122343305
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 7166806 ~ 7189549 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCGACGACAGTGTCCCAATCACACACCTGCCTAACTACCGCGGACTTCGCCAgagcgcgcacgcacgcacgcacgcacgttACGCAGCGGAAGCGTGCACGCCCTCAGGCCATCGGAACATGGTGGTGTACAAGAgAGAAAGTTCCCTATACTgaccattatatgactgacagactaaAACGGGTTGattaaaaaatctcaaaattggatctgatgaagaaaaaaaagacgcCTACACCTCAGATGCCCTTGGGggctatataaataaaaagtgcaaatcTGTTTTCTGACAACAAACTATTcttcatcttggatggcctgatGTTCTTTAGGTGTCTGAAGATAAGGTTGCGTGAGAAAGTACATTGTGTACAGCCTACACCTATAAGAACATTATCAGCAGTCAAAACAAGACATGAGGACTTTAGATACGAGGAGACAACTTCCATACAGTCTTAACATACTGACCTACACGGCTCTCTTGACTGGATGTGTGGGCATGTTACCACTATTCCTCAACCTCTTCAACATAATTCAGCTCAGCTCATGGGCCATGTCCCCCATCTCCAGGGCTTTGTTACTGCTGAAGCTGTTGAAGTCCTGCTGATGAGCCATGCTCTGGTGAAGCTGGAACAGGGGGTCCCTCCAGGCCATCAGCAGTTTAAGAATCACCTCGGTTAACTCTTCACGCTGGCACACAGGAGTTTCAAGAGTTAAACGCTACAGGAAATACTGTTCCTTCAGACGGAAAGAACAAGAGAAGATGAGGGGGAAAAACCTGAAACTGAAGCCACG

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39740 lncRNA downstream 210431 6883901 ~ 6956375 (-) True G26799
TU39728 lncRNA downstream 258311 6845559 ~ 6908495 (-) True G26790
TU39736 lncRNA downstream 303424 6862723 ~ 6863382 (-) True G26796
TU39733 lncRNA downstream 304559 6860074 ~ 6862247 (-) True G26795
TU39723 lncRNA downstream 322957 6841974 ~ 6843849 (-) True G26787
TU39779 lncRNA upstream 24785 7214334 ~ 7220911 (-) True si:dkey-261e22.4
TU39780 lncRNA upstream 129953 7319502 ~ 7319725 (-) True G26832
TU39813 lncRNA upstream 183624 7373173 ~ 7373595 (-) True G26846
XR_006250789.1 lncRNA upstream 210117 7399666 ~ 7456641 (-) True LOC122343472
XR_006250790.1 lncRNA upstream 221776 7411325 ~ 7456641 (-) False LOC122343472
XM_043237904.1 mRNA downstream 8892 7119870 ~ 7157914 (-) True nell2b
XM_043237905.1 mRNA downstream 67553 7091568 ~ 7099253 (-) True twf1b
XM_043237882.1 mRNA downstream 75764 7085314 ~ 7091042 (-) False pus7l
XM_043237881.1 mRNA downstream 75764 7085315 ~ 7091042 (-) True pus7l
XM_043237884.1 mRNA downstream 75764 7085316 ~ 7091042 (-) False pus7l
XM_043236379.1 mRNA upstream 24905 7214454 ~ 7220901 (-) False si:dkey-261e22.4
XM_043236378.1 mRNA upstream 24905 7214454 ~ 7220901 (-) False si:dkey-261e22.4
XM_043236618.1 mRNA upstream 35960 7225509 ~ 7318055 (-) False LOC122342649
XM_043236619.1 mRNA upstream 35960 7225509 ~ 7318055 (-) False LOC122342649
XM_043236620.1 mRNA upstream 35960 7225509 ~ 7318055 (-) True LOC122342649
TU39663 other downstream 427211 6737641 ~ 6739595 (-) False il22
TU39610 other downstream 805363 6350503 ~ 6361443 (-) True msrb3
TU39270 other downstream 1226807 5938055 ~ 5939999 (-) True mrps33
TU39262 other downstream 1253268 5909473 ~ 5913538 (-) True G26462
TU39180 other downstream 1313440 5850404 ~ 5853366 (-) True G26414
TU39958 other upstream 365566 7555115 ~ 7558453 (-) True G26951
TU40263 other upstream 1058362 8247911 ~ 8249225 (-) False LOC122343432
TU40311 other upstream 1270957 8460506 ~ 8468028 (-) True G27232
XR_006250786.1 other upstream 1704635 8894184 ~ 8941271 (-) False LOC122343470
XR_006250788.1 other upstream 1706243 8895792 ~ 8941271 (-) False LOC122343470

Expression Profile