RNA id: XR_006250755.1


Basic Information

Item Value
RNA id XR_006250755.1
length 820
lncRNA type inter_gene
GC content 0.46
exon number 7
gene id LOC122343346
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3988683 ~ 4007148 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGCCGGACAAGTGCTGCATTTCTTAAATCCAGCCCCTAGAGCCTGAAGAGCCGCCCTCTCTGTCCTCGACTGCACGCCCCTAACCAACATTAAACACAACCTCAGTACAAGTAAAAGTACACGAGTTGCAAGGTTTTCAGCTGTGTTGAAGCAGCCACTGGGTTTAATGAGCCGGATGTGGTCACTGAGAACCAGAGATGTGAACAAAGATAATTGCTGTGGAGGTGTGGTGAAGAAATAGGGCACAGCCGAAAGCATCGCTGAATTACTCCACAGTGGTTTTACTGTGAACATTTGTAAAGAGGTGGATGGACTGAAAGGTTTCTGCTGTTTTACGGCCTGGGGTTTGAGGCTGGAACTGTTCTGGAATCAAAAACgtctctctgtgtgagtgttGAGGAGGGCATCGAGGCACGACCAGGTTCTAACTGATATATATTTCGACGAGTGAGGTCCTCGACATAATCAGATGTTCCACAGCCTGCACAGAAACCCTGAAGTCCTAATGAAGAGCACTTGTGAATGTGAGCTGCTGTAGAGGAGTTGTTCTGCTGGACGTGTTTAAAGGACTTCAGAAGGATATGACATCACATGCTCAGGTCAAGACAGTCTGAAACACCCCAGACCTTAAAGATACAAATCTTGCTCTCAACAGATGACTGTCTCCAGATGCTCTGCACAGTCCAGGTGAGATGATGCCTCATGTAAAGGACTGGCTGACTGGTTGTTGGAATCTATACTGACTTCTATTGCCATGGATACCACATCACATGACCTATTTGGATTGTAGAATTCCTGCCATGCATTAATGAatcaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250756.1 lncRNA upstream 180785 3806939 ~ 3807898 (+) True LOC122343347
TU37989 lncRNA upstream 181121 3807049 ~ 3807562 (+) False LOC122343347
TU37949 lncRNA upstream 279831 3708537 ~ 3708852 (+) True G25537
TU37948 lncRNA upstream 281619 3706859 ~ 3707064 (+) True G25536
TU37947 lncRNA upstream 286312 3701834 ~ 3702371 (+) True G25535
TU38355 lncRNA downstream 121775 4128923 ~ 4129250 (+) True G25823
TU38356 lncRNA downstream 122191 4129339 ~ 4129628 (+) True G25824
TU38357 lncRNA downstream 122996 4130144 ~ 4130422 (+) True G25825
TU38359 lncRNA downstream 124960 4132108 ~ 4132552 (+) True G25827
XR_006250578.1 lncRNA downstream 217435 4224583 ~ 4227231 (+) True LOC122342475
XM_043237758.1 mRNA upstream 12896 3973075 ~ 3975787 (+) False nfyba
XM_043237759.1 mRNA upstream 12896 3973225 ~ 3975787 (+) True nfyba
XM_043237744.1 mRNA upstream 29423 3909143 ~ 3959260 (+) False slc41a2b
XM_043237743.1 mRNA upstream 61802 3909143 ~ 3926881 (+) True slc41a2b
XM_043237733.1 mRNA upstream 82752 3897077 ~ 3905931 (+) True aldh1l2
XM_043237723.1 mRNA downstream 1193 4008341 ~ 4039405 (+) True srgap1b
XM_043237724.1 mRNA downstream 1442 4008590 ~ 4039405 (+) False srgap1b
XM_043237725.1 mRNA downstream 2086 4009234 ~ 4039405 (+) False srgap1b
XM_043237721.1 mRNA downstream 5135 4012283 ~ 4039405 (+) False srgap1b
XM_043237722.1 mRNA downstream 5322 4012470 ~ 4039405 (+) False srgap1b
TU37969 other upstream 250089 3737502 ~ 3738594 (+) True G25551
TU37922 other upstream 486589 3481629 ~ 3502094 (+) True G25514
unassigned_transcript_301 other upstream 517548 3470366 ~ 3471135 (+) True LOC122343352
unassigned_transcript_300 other upstream 541109 3447058 ~ 3447574 (+) True LOC122343393
unassigned_transcript_299 other upstream 547183 3440912 ~ 3441500 (+) True LOC122342809
TU38369 other downstream 222481 4229629 ~ 4231092 (+) True G25837
TU38370 other downstream 225760 4232908 ~ 4235244 (+) True G25838
TU38543 other downstream 543015 4550163 ~ 4628899 (+) False G25958
TU38544 other downstream 543015 4550163 ~ 4628899 (+) True G25958
TU38659 other downstream 922323 4929471 ~ 4942735 (+) False LOC122343397

Expression Profile