RNA id: XR_006250771.1


Basic Information

Item Value
RNA id XR_006250771.1
length 2543
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id LOC122343411
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2790078 ~ 2825789 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCAGTCATACCTTGGTCACCGCCGTACACCTCCAGCATGCTGTTGTTCAGCGACACCTtcagaggaaagagagaaacTACGTACCGGCAGCAGTTGAATCTCAGTGAAAGAGATGACTTTAACCACACAGCAGCGGCTCATGGTCCAAAAGAAGGCCTTCAGGACTGCGGTGATTCTGTGACCTTTCAGAGCTGGGTGGGCGATGGTCAGATACTGAGCAAGCACAGCTGAGTGAATCAGAGGGCTACTTTGACAGCTCGCAGGCTGGCAGAAGCCTCTCGGATGACTGGAGATCAGAGAAGACAGGCTGGAAAGCAGAAGTCCAGCTGAGAGAAGATCAGAAGCAGCACAACTTCAACCAGAGCTATTGTGAAGGAACGTAATGGCTTAGATAACTTTTTCCCctccgtctttctttctttttttttttcttgtgaaaacTTACCCTTCAGAATTTTGAATTGCCCACTTTAAGGTCTGTGGGGCTTTGTCTGGCTTTGACAAAAGAGGCATGTTTTTCTTTCCGCCTTGTCCTGAAGAGCCCGATCTGTTTAAACGGTGTCACTCCTGCTTGATGTTCTCCCGTCTGCAGCGGCGCTGGCTCAGCCCCGTTCGTTCGCCGTAGACGCGCGCgctgtggaaataaaaatacGATTAAATGCGCAAACACGAGtctgtaaatgtgtaaaatggcTACATTACAGTCGCATGCATATGTAGACTTCATTAAATCTGCatatctttgtttgttttggtttttgatgTTTGTGTGCGTCAAGaacttttaagaatttttaagcTGAATTAGCGTTttcttaaatgtgttaaattaacTCGATTGTAAATCAAGCCTGTGCCATCTGTGACCCGGCGAAACATACAGAGGGCTCCTGTGGTGTAATGTCTCCCTCTGGTGGAGGATGTGATGAACATCTTGCACTGCATTACATGCATGTATTAGTATGACTTAATTAACCTGAAGGTTTGCTCTGTTAGCATTCACTCAAATTGTTCTTACCGTATATAcgtttctctttcttttgttgagcaccaaaaaaaagcatattttgaagaatgttggaaaCCAAACACTTACTGGTAGACATCAACTCAAAGGCCAGACAGAAAAGAAACTCATATAGGTctggaggctgctGGACATCGCTCTGGGACCGGACCAATCCTCAGCCCTTCATTCACTCAAAGCAGAGATCCGGCCGGGATTGAACCAGCAACCTTTGCGTTGCGAGACAGCGCCCTAATCGCTGAGCCACAGAGTTTACGTGTGAAGGAGCTTGTATTTCAGATTGCAGTTTCACAATAAACTAGTTAAAGAGTCATTTAACACGCAAAGGAGGGCTTGAACGCAATGAGCATCGTTTAGGGAATAAAACTcataacaaacataaaataataaatccacAAGGCTCTAATAACTGAGCCAGAGTTGGCTGATTTCATctatgttttgtttgaaatgaaaagaagcaTTTGCAACTCATTTATATCCAAGAGACATGGTTGGGATTGAACCAGCAACCTCTGAAACTAAGAGACAGCTCTTATAGCCTTATAGTTGAGCTAGCTGAAGTATGATCATCTGCAGTGGGGTTTGAACTCATATCATCACCAAAGCATTGCACTTGAAGAAAGAGCCATCTCACGCTGGTTGAACGTAGCATAAGCAACAGTGGGCTTTGAACTCAATACACCACGATTAAACAGCAACACTTTATCGCTTTCCAGCCAGACGTCAGTCGGTGTGTGCGGTAAATAAAGCACTGAGTGACGCGCGTCACACAATGATGGTGATTGGCTGTGGaagatgaatatttaattagctGTCTGATCAAGCTGTGGGTGCTTATGAGGGtaacattttgaatgcaatATAGTTAATAGTAGTTATAGTTCTGGCTGCCATTCTCTTCACTTAACTAAGTGATTTCGTGATCTTATTTTcgttaattttaaaataagtctgaATTAGTGTTACCCTTGTGGAGAATAGTGTTCTCTTTGAACTACATTTGATGCACTTCATATGTTATTTTGGGTGTgagtttttgcatttaaaagccGTTTCAAAGGGTTGTTTACAACcactttatttgttgttttttatcgTGATCCTTCTGAAGAAAACAGTATATTGAAAGAAGAGGCTGAAGAGTGccttgttttttcttctgtgagCTGATTGGATGAAGTGAAGTAGGcgtttctttcaaaaatgagCAGTTGCAGATCTGAGGGGTGGGGCTTGCATGGACTCATTGTTCACCAGTTGTTCACTCAACAGTGTGAGCTAACAATGAACTTTAATTAAACCCTCTAGTGGTGACTTTTGTGAATTACACCGCTGCGTATCGAGTCTAATGaacttaaattaattaaacccTCTAGTGGTGATGTTTGTGAATTACACCGTGGCGTATCGAGTCTAATgaactttaattaattaaacccTCTAGTGGTGATGTTTGTGAATTACACCGCTGCGTATCGAGTCTAATGaacttaaattaattaaacccTCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250772.1 lncRNA upstream 2421 2726802 ~ 2787657 (+) True LOC122343412
XR_006250552.1 lncRNA upstream 70717 2686424 ~ 2719361 (+) True LOC122342395
XR_006250553.1 lncRNA upstream 70717 2686424 ~ 2719361 (+) False LOC122342395
XR_006250564.1 lncRNA upstream 110335 2666342 ~ 2679743 (+) True LOC122342427
XR_006250604.1 lncRNA upstream 127033 2662114 ~ 2663045 (+) True LOC122342588
TU37817 lncRNA downstream 105319 2931108 ~ 2931859 (+) True G25453
TU37820 lncRNA downstream 109373 2935162 ~ 3030892 (+) True G25455
TU37821 lncRNA downstream 109373 2935162 ~ 2936229 (+) False G25455
TU37823 lncRNA downstream 191778 3017567 ~ 3024764 (+) False G25456
TU37828 lncRNA downstream 191778 3017567 ~ 3024764 (+) False G25456
XM_043237770.1 mRNA upstream 148241 2622539 ~ 2641837 (+) True mdfic
XM_043237879.1 mRNA upstream 187577 2505946 ~ 2602501 (+) True foxp2
XM_043237878.1 mRNA upstream 187577 2538019 ~ 2602501 (+) False foxp2
XM_043237880.1 mRNA upstream 187577 2538019 ~ 2602501 (+) False foxp2
XM_043237518.1 mRNA upstream 395637 2388979 ~ 2394441 (+) True ifrd1
XM_043236336.1 mRNA downstream 21485 2847274 ~ 2862389 (+) True elk3
XM_043237665.1 mRNA downstream 81670 2907459 ~ 2908695 (+) True si:ch1073-67j19.1
XM_043236380.1 mRNA downstream 86389 2912178 ~ 2913479 (+) True LOC122342536
XM_043237682.1 mRNA downstream 90372 2916161 ~ 2920243 (+) True phyh
XM_043237080.1 mRNA downstream 97432 2923221 ~ 2927098 (+) False ucmaa
TU37230 other upstream 1001982 1784292 ~ 1788096 (+) True LOC122342451
TU37269 other upstream 1117119 1670512 ~ 1672959 (+) True LOC122343488
TU37077 other upstream 1498854 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 2124548 654092 ~ 665530 (+) True G24771
TU36683 other upstream 2415996 373527 ~ 374082 (+) True G24632
TU37871 other downstream 289719 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 293740 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 613342 3439131 ~ 3439654 (+) True LOC122342808
unassigned_transcript_299 other downstream 615123 3440912 ~ 3441500 (+) True LOC122342809
unassigned_transcript_300 other downstream 621269 3447058 ~ 3447574 (+) True LOC122343393

Expression Profile