RNA id: XR_006250781.1


Basic Information

Item Value
RNA id XR_006250781.1
length 1319
lncRNA type inter_gene
GC content 0.50
exon number 5
gene id LOC122343450
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2106764 ~ 2118325 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgttttatctctTGCATTCTGTGTCCTCAGAACTGCCGTAACACTCATGGATCTGAAACCAGGGTTTTATTTAGCACAAGATCAGTGATGGACCGATAGACTCCAGCGAGACAGATGGGCAGATGTGGCTTCACAGCActCAGCGACTGCAAACGACAGGCAGAACAAACTGTCCTTACCCTCTCCGAGCTCAGCTGGAGGGACGTCGCTGATACCCATGATGCTTTAGGTTACCACTGAGTGACAGATGCTGTAACACTGGCAGAGGTTCAGTGAATCGGATTAGCATTAAGGACATCTGAAGCATCCCTCTCtgttttaattagcaaaaacaTTCGAAACCCTCAGCAATGACCGCGAGCTCATGAGAAGATGCGTGCCGTATTATAACTCTGGCTATACGGTAAACTTACACGAAACCAAACTGTGTTTACAGACTGACTGTCTGATCCCAGAAACGCAGGATCCTTCGGCTCTGCTTGTGCTGGTTTCCTGAGCCTCATCTGAAATCAAGCGCATCGAAGGGTCAGGAGGTGCAGCAGAACCAAGCATGCGATCTGACAGCCGTGAGAAACACACTAAACGCTCTCGCAGACGGACAGAGCCTTCCTCGCCTCCTCAACACCCTCTGTTTATAGGATGAATTCATCTCATGAAGACATGTTTCAACTCGACAGGCTTCTGCCTTGTTACGGATGGATTTGCagcagaaatgcaaaaaagaaatgaagagcCTCCTCCACTGTAAAAGCTTGTTGAAGCAGACAAATGAGGAGATTCACAGCCCACCTGAAGCCCAGGAGAACGCCGCCCGAGCAGGCATGCCAGTGGAGGCCCCTGCTAATTATCAGGCCCCTCTCCATGACTGACATCTGCTTCCTACCCCTCTATTAGGACATCACCAGGGcttgcagaaaaaaagcaaGGAGAAACCACACAACAACAAGGGGTTCCACTATGCTCTGCCTCCTGATGTGAGAAGTATTACTGATGTCGACTCTGAAGACTGTAGGTATGGTGACGGTTCGTCTGTCAAGCGGCTGCCCTCTGGTGACCTTGTCCGTCTGAGGTATCTGCGGCTCAGTGGAGCGTTTCCTGGCCGTCTCATGCTCTATCAGTCCCAATGACGGAACACAGCACCCGACTGGACCCGCATGGCCATAAGGGGTGCTGGAGTCAAGCCGATCCGACAGCCTAGCTCACTCCTCTGGTCTAAGGGTCAACGCTGAGGTCATTCAGCACCTAGAGTCACCCTGGGTAGAATGCAGTCATGACATGAATCCTTCCTGGATGTCCTTTCGATTGCCATTGCACACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37586 lncRNA downstream 8963 2091352 ~ 2097801 (-) True tnni4a
TU37588 lncRNA downstream 11871 2091352 ~ 2094893 (-) False tnni4a
TU37567 lncRNA downstream 74108 2032241 ~ 2032656 (-) True G25277
TU37518 lncRNA downstream 113008 1991992 ~ 1993756 (-) True G25240
TU37445 lncRNA downstream 203303 1903185 ~ 1903461 (-) True G25190
TU37599 lncRNA upstream 44205 2162530 ~ 2163319 (-) True G25298
TU37600 lncRNA upstream 45101 2163426 ~ 2163708 (-) True G25299
XR_006250782.1 lncRNA upstream 48980 2167305 ~ 2182669 (-) False LOC122343454
XR_006250783.1 lncRNA upstream 48980 2167305 ~ 2182669 (-) True LOC122343454
TU37686 lncRNA upstream 85260 2203585 ~ 2279282 (-) False LOC122343417
XM_043236029.1 mRNA downstream 9028 2091351 ~ 2097736 (-) False tnni4a
XM_043237018.1 mRNA downstream 18185 2042953 ~ 2088579 (-) False cald1a
XM_043237016.1 mRNA downstream 18185 2042953 ~ 2088579 (-) False cald1a
XM_043237019.1 mRNA downstream 18186 2042953 ~ 2088578 (-) False cald1a
XM_043237017.1 mRNA downstream 38840 2042953 ~ 2067924 (-) False cald1a
XM_043236830.1 mRNA upstream 181310 2299635 ~ 2375710 (-) True dock4b
XM_043236832.1 mRNA upstream 181310 2299635 ~ 2375709 (-) False dock4b
XM_043236833.1 mRNA upstream 181310 2299635 ~ 2375709 (-) False dock4b
XM_043237098.1 mRNA upstream 297341 2415666 ~ 2423463 (-) True tmem168a
XM_043236237.1 mRNA upstream 348762 2467087 ~ 2471272 (-) True gpr85
XR_006250653.1 other downstream 18185 2042953 ~ 2088579 (-) True cald1a
TU37444 other downstream 204197 1901843 ~ 1902567 (-) False rsph9
TU37319 other downstream 451957 1653591 ~ 1654807 (-) False ccdc167
XR_006250650.1 other downstream 488466 1609360 ~ 1618298 (-) False zgc:113263
XR_006250644.1 other upstream 184002 2302327 ~ 2375716 (-) False dock4b
XR_006250645.1 other upstream 186021 2304346 ~ 2375716 (-) False dock4b
TU38086 other upstream 902737 3021062 ~ 3021457 (-) False LOC122342805
TU38175 other upstream 1416512 3534837 ~ 3547467 (-) False LOC122342819
TU38177 other upstream 1429901 3548226 ~ 3577096 (-) False LOC122342819

Expression Profile