RNA id: XR_006250818.1



Basic Information


Item Value
RNA id XR_006250818.1
length 119
RNA type rRNA
GC content 0.51
exon number 1
gene id LOC122343689
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 15857384 ~ 15857502 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gcttacggccataccaccctgttcacgcctgatctcgtctgatctcagaagctaagcagagttgggcctagttagtacttggatgggagactgcctaggaataccaggtgctgtaagtt

Function


GO:

id name namespace
GO:0008015 blood circulation biological_process
GO:0003013 circulatory system process biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU42857 lncRNA downstream 13645 15843405 ~ 15843739 (-) True G28895
TU42849 lncRNA downstream 123501 15733363 ~ 15733883 (-) True G28887
TU42824 lncRNA downstream 202203 15565419 ~ 15655181 (-) True G28870
XR_006250641.1 lncRNA downstream 412155 15443764 ~ 15445229 (-) True LOC122342747
TU42788 lncRNA downstream 439146 15416856 ~ 15418238 (-) True G28850
TU42859 lncRNA upstream 70641 15928143 ~ 15928900 (-) True G28897
TU42891 lncRNA upstream 521198 16378700 ~ 16383670 (-) True G28916
TU42910 lncRNA upstream 554358 16411860 ~ 16419956 (-) True G28933
TU42913 lncRNA upstream 554358 16411860 ~ 16419956 (-) False G28933
TU42916 lncRNA upstream 555025 16412527 ~ 16420139 (-) True G28935
XM_043236016.1 mRNA downstream 177266 15674819 ~ 15680118 (-) False tmem19
XM_043236018.1 mRNA downstream 177360 15674819 ~ 15680024 (-) False tmem19
XM_043236017.1 mRNA downstream 177360 15674819 ~ 15680024 (-) True tmem19
XM_043236424.1 mRNA downstream 184150 15664443 ~ 15673234 (-) True zgc:171422
XM_043236426.1 mRNA downstream 193078 15656075 ~ 15664306 (-) False slc37a3
XM_043236543.1 mRNA upstream 620289 16477791 ~ 16483176 (-) True LOC122342598
XM_043237033.1 mRNA upstream 627065 16484567 ~ 16498839 (-) True LOC122342885
XM_043236534.1 mRNA upstream 680478 16537980 ~ 16542902 (-) True LOC122342596
XM_043236544.1 mRNA upstream 715625 16573127 ~ 16593094 (-) True LOC122342599
XM_043237521.1 mRNA upstream 853022 16710524 ~ 16724794 (-) False LOC122343211
XR_006250809.1 other downstream 10297 15846969 ~ 15847087 (-) True LOC122343609
XR_006250613.1 other downstream 245809 15601440 ~ 15611575 (-) False kiaa0930
TU42583 other downstream 829766 15024587 ~ 15027618 (-) True LOC122342864
TU42581 other downstream 829766 15026110 ~ 15027618 (-) False LOC122342864
TU42549 other downstream 1047247 14808597 ~ 14810137 (-) False LOC122342642
XR_006250819.1 other upstream 22619 15880121 ~ 15880239 (-) True LOC122343700
XR_006250820.1 other upstream 23018 15880520 ~ 15880638 (-) True LOC122343711
XR_006250908.1 other upstream 24999 15882501 ~ 15882619 (-) True LOC122343928
XR_006250821.1 other upstream 31380 15888882 ~ 15889000 (-) True LOC122343722
XR_006250822.1 other upstream 31777 15889279 ~ 15889397 (-) True LOC122343733

Expression Profile