RNA id: XR_006250841.1



Basic Information


Item Value
RNA id XR_006250841.1
length 164
RNA type snRNA
GC content 0.56
exon number 1
gene id LOC122343852
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25353921 ~ 25354084 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATACTTACCTGGCAGGGGAGACACCATGATCAAGAAGGTGGTTCACCCAGGGCGAGGCTCGACCATTGCACTCCGGTTGTGCTGACCCCTGCGAATTCCCCAAATGTGGGAATCTCGACTGCATAATTTATGGTAGTGGGGGACTGCGTTCGCGCTCTCCCCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU46148 lncRNA downstream 5276 25348374 ~ 25348645 (-) True G31237
TU46140 lncRNA downstream 38352 25315190 ~ 25315569 (-) True G31229
TU46136 lncRNA downstream 171577 25182013 ~ 25182344 (-) True G31225
TU46133 lncRNA downstream 370592 24983088 ~ 24983329 (-) True G31222
TU46132 lncRNA downstream 371232 24982326 ~ 24982689 (-) True G31221
TU46172 lncRNA upstream 82022 25436106 ~ 25437120 (-) True G31250
TU46175 lncRNA upstream 109069 25463153 ~ 25463544 (-) True G31253
TU46281 lncRNA upstream 280864 25634948 ~ 25635148 (-) True G31335
TU46297 lncRNA upstream 343346 25697430 ~ 25697757 (-) True G31351
TU46298 lncRNA upstream 348186 25702270 ~ 25703067 (-) True G31352
XM_043236134.1 mRNA downstream 319247 25032134 ~ 25034674 (-) True LOC122342351
XM_043236132.1 mRNA downstream 372298 24963974 ~ 24981623 (-) True LOC122342349
XM_043236177.1 mRNA downstream 594614 24754056 ~ 24759307 (-) True LOC122342407
XM_043237384.1 mRNA downstream 723287 24627064 ~ 24630634 (-) False LOC122343065
XM_043236135.1 mRNA upstream 133104 25487188 ~ 25496806 (-) True LOC122342354
XM_043236417.1 mRNA upstream 200700 25554784 ~ 25567493 (-) False irf10
XM_043236416.1 mRNA upstream 200700 25554784 ~ 25567493 (-) True irf10
XM_043236421.1 mRNA upstream 256531 25610615 ~ 25625124 (-) True samhd1
XM_043236423.1 mRNA upstream 272523 25626607 ~ 25629375 (-) True mtg2
XR_006250869.1 other downstream 1334 25352399 ~ 25352587 (-) True LOC122343882
XR_006250852.1 other downstream 1768 25351989 ~ 25352153 (-) True LOC122343864
TU46123 other downstream 593135 24759000 ~ 24760786 (-) False LOC122342407
TU46025 other downstream 1026689 24323970 ~ 24327232 (-) False LOC122342340
XR_006250860.1 other upstream 253 25354337 ~ 25354527 (-) True LOC122343873
XR_006250856.1 other upstream 1844 25355928 ~ 25356088 (-) True LOC122343868
XR_006250874.1 other upstream 2254 25356338 ~ 25356529 (-) True LOC122343887
XR_006250842.1 other upstream 3821 25357905 ~ 25358068 (-) True LOC122343853
XR_006250861.1 other upstream 4237 25358321 ~ 25358511 (-) True LOC122343874

Expression Profile