RNA id: XR_006250847.1



Basic Information


Item Value
RNA id XR_006250847.1
length 162
RNA type snRNA
GC content 0.56
exon number 1
gene id LOC122343859
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25386213 ~ 25386374 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATACTTACCTGGCAGGGGAGACACCATGATCAAGAAGGTGGTTCACCCAGGGCGAGGCTCGACCATTGCACTCCGGTTGTGCTGACCCCTGCGAATTCCCCAAATGTGGGAATCTCGACTGCATAATTTATGGTAGTGGGGGACTGCGTTCACGCTCCCCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU46148 lncRNA downstream 37568 25348374 ~ 25348645 (-) True G31237
TU46140 lncRNA downstream 70644 25315190 ~ 25315569 (-) True G31229
TU46136 lncRNA downstream 203869 25182013 ~ 25182344 (-) True G31225
TU46133 lncRNA downstream 402884 24983088 ~ 24983329 (-) True G31222
TU46132 lncRNA downstream 403524 24982326 ~ 24982689 (-) True G31221
TU46172 lncRNA upstream 49732 25436106 ~ 25437120 (-) True G31250
TU46175 lncRNA upstream 76779 25463153 ~ 25463544 (-) True G31253
TU46281 lncRNA upstream 248574 25634948 ~ 25635148 (-) True G31335
TU46297 lncRNA upstream 311056 25697430 ~ 25697757 (-) True G31351
TU46298 lncRNA upstream 315896 25702270 ~ 25703067 (-) True G31352
XM_043236134.1 mRNA downstream 351539 25032134 ~ 25034674 (-) True LOC122342351
XM_043236132.1 mRNA downstream 404590 24963974 ~ 24981623 (-) True LOC122342349
XM_043236177.1 mRNA downstream 626906 24754056 ~ 24759307 (-) True LOC122342407
XM_043237384.1 mRNA downstream 755579 24627064 ~ 24630634 (-) False LOC122343065
XM_043236135.1 mRNA upstream 100814 25487188 ~ 25496806 (-) True LOC122342354
XM_043236417.1 mRNA upstream 168410 25554784 ~ 25567493 (-) False irf10
XM_043236416.1 mRNA upstream 168410 25554784 ~ 25567493 (-) True irf10
XM_043236421.1 mRNA upstream 224241 25610615 ~ 25625124 (-) True samhd1
XM_043236423.1 mRNA upstream 240233 25626607 ~ 25629375 (-) True mtg2
XR_006250865.1 other downstream 1367 25384655 ~ 25384846 (-) True LOC122343878
XR_006250858.1 other downstream 1808 25384248 ~ 25384405 (-) True LOC122343871
XR_006250844.1 other downstream 6393 25379657 ~ 25379820 (-) True LOC122343856
XR_006250864.1 other downstream 7937 25378086 ~ 25378276 (-) True LOC122343877
XR_006250843.1 other downstream 8382 25377668 ~ 25377831 (-) True LOC122343855
XR_006250868.1 other upstream 254 25386628 ~ 25386817 (-) True LOC122343881
TU46256 other upstream 172666 25559040 ~ 25561198 (-) True G31314
unassigned_transcript_476 other upstream 595092 25981466 ~ 25981546 (-) True trnas-uga_31
unassigned_transcript_477 other upstream 598460 25984834 ~ 25984906 (-) True trnak-uuu_27
unassigned_transcript_478 other upstream 599591 25985965 ~ 25986045 (-) True trnas-uga_32

Expression Profile