RNA id: unassigned_transcript_300


Basic Information

Item Value
RNA id unassigned_transcript_300
length 432
RNA type V_gene_segment
GC content 0.50
exon number 2
gene id LOC122343393
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3447058 ~ 3447574 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gcagaacacaacacaatcttcatcatcacacaagactcaactactacaatgaacaacatcctcatcctcatctggactcTGACTCTCTGTATTCAGGAGATCTGGGGACAAGTGACAGTGACTCAGAATCCAGAAGTAAAATCCATCAAACAAGGAGAAACTGTTACAATCAGCTGTAAAACCAGTCAGCCGATTTCTGGCTGTAGTGACTGTGTGTCTTGGTATcagcagaaacctggagaagctcctaaactcctcatTTATTGCATAAGAAGCCTTTAttcaggaactccatctagattcagtggaagtggatcaAACTAtggaagtgatttctctctgaccatcagtggagtccagactgaagatacaggagattattactgtcagagttatCACTACATCAACAGTAAAgctgtgttcacacagtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37903 lncRNA upstream 12596 3409001 ~ 3434462 (+) True G25502
TU37910 lncRNA upstream 17912 3420636 ~ 3429146 (+) True G25504
TU37824 lncRNA upstream 422294 3020883 ~ 3024764 (+) True G25456
TU37933 lncRNA downstream 98548 3546122 ~ 3547509 (+) True G25523
TU37946 lncRNA downstream 253854 3701428 ~ 3701754 (+) True G25534
TU37947 lncRNA downstream 254260 3701834 ~ 3702371 (+) True G25535
TU37948 lncRNA downstream 259285 3706859 ~ 3707064 (+) True G25536
TU37949 lncRNA downstream 260963 3708537 ~ 3708852 (+) True G25537
XM_043236827.1 mRNA upstream 65886 3311653 ~ 3381172 (+) True LOC122342760
XM_043236828.1 mRNA upstream 65886 3360189 ~ 3381172 (+) False LOC122342760
XM_043236829.1 mRNA upstream 65886 3366615 ~ 3381172 (+) False LOC122342760
XM_043236826.1 mRNA upstream 65886 3371526 ~ 3381172 (+) False LOC122342760
XM_043236256.1 mRNA upstream 140300 3119535 ~ 3306758 (+) False erc1b
XM_043236953.1 mRNA downstream 132054 3579628 ~ 3601006 (+) True LOC122342820
XM_043237790.1 mRNA downstream 213043 3660617 ~ 3675293 (+) True LOC122343370
XM_043236806.1 mRNA downstream 230671 3678245 ~ 3701214 (+) True adipor2
XM_043237555.1 mRNA downstream 313010 3760584 ~ 3769843 (+) True sult4a1
XM_043237747.1 mRNA downstream 441863 3889437 ~ 3895875 (+) True samm50l
unassigned_transcript_299 other upstream 5558 3440912 ~ 3441500 (+) True LOC122342809
unassigned_transcript_298 other upstream 7404 3439131 ~ 3439654 (+) True LOC122342808
XR_006250571.1 other upstream 140300 3119529 ~ 3306758 (+) False erc1b
TU37871 other upstream 329070 3115508 ~ 3117988 (+) True ninj2
TU37230 other upstream 1658962 1784292 ~ 1788096 (+) True LOC122342451
unassigned_transcript_301 other downstream 22792 3470366 ~ 3471135 (+) True LOC122343352
TU37922 other downstream 34055 3481629 ~ 3502094 (+) True G25514
TU37969 other downstream 289928 3737502 ~ 3738594 (+) True G25551
TU38369 other downstream 782055 4229629 ~ 4231092 (+) True G25837
TU38370 other downstream 785334 4232908 ~ 4235244 (+) True G25838

Expression Profile