RNA id: unassigned_transcript_305



Basic Information


Item Value
RNA id unassigned_transcript_305
length 73
RNA type tRNA
GC content 0.59
exon number 2
gene id trnay-gua_3
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5717046 ~ 5717133 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CCTTcgatagctcagttggtagagcggaGGACTGTAGATCCTTAGGTCGCTGGTTCGAATCCGGCTCGAAGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006250579.1 lncRNA downstream 611 5715139 ~ 5716435 (-) True LOC122342480
TU39155 lncRNA downstream 6840 5704489 ~ 5710206 (-) True G26398
TU39098 lncRNA downstream 143614 5570544 ~ 5573432 (-) True G26361
TU39085 lncRNA downstream 147674 5555142 ~ 5569372 (-) True G26359
TU39090 lncRNA downstream 147674 5559772 ~ 5569372 (-) False G26359
TU39168 lncRNA upstream 10924 5728057 ~ 5728729 (-) True G26407
TU39263 lncRNA upstream 189622 5906755 ~ 5913538 (-) False G26462
TU39264 lncRNA upstream 196520 5913653 ~ 5914700 (-) True G26463
TU39265 lncRNA upstream 200138 5917271 ~ 5917890 (-) True G26464
TU39273 lncRNA upstream 226506 5943639 ~ 6017691 (-) False G26469
XM_043236302.1 mRNA downstream 6027 5580502 ~ 5711019 (-) False btbd11a
XM_043236300.1 mRNA downstream 16305 5580502 ~ 5700741 (-) True btbd11a
XM_043236301.1 mRNA downstream 16306 5580502 ~ 5700740 (-) False btbd11a
XM_043236799.1 mRNA downstream 138466 5575657 ~ 5578580 (-) True LOC122342741
XM_043236196.1 mRNA downstream 167398 5540289 ~ 5549648 (-) True podxl
XM_043237925.1 mRNA upstream 3283 5720416 ~ 5724961 (-) True si:dkey-222f8.3
XM_043237926.1 mRNA upstream 3283 5720416 ~ 5724906 (-) False si:dkey-222f8.3
XM_043236751.1 mRNA upstream 203512 5920645 ~ 5937372 (-) True braf
XM_043236752.1 mRNA upstream 203512 5920645 ~ 5937367 (-) False braf
XM_043236019.1 mRNA upstream 221545 5938678 ~ 5940015 (-) False mrps33
unassigned_transcript_303 other downstream 951879 4765080 ~ 4765167 (-) True trnay-gua_1
unassigned_transcript_302 other downstream 952106 4764853 ~ 4764940 (-) True trnay-gua
XR_006250792.1 other downstream 959219 4731224 ~ 4757827 (-) False LOC122343492
TU38442 other downstream 1449551 4264926 ~ 4267495 (-) True G25880
TU38194 other downstream 2112776 3602358 ~ 3604270 (-) False LOC122342823
TU39166 other upstream 1879 5719012 ~ 5720250 (-) True G26405
TU39169 other upstream 12885 5730018 ~ 5736946 (-) True G26408
TU39171 other upstream 12885 5730018 ~ 5736946 (-) False G26408
TU39173 other upstream 12885 5730018 ~ 5736946 (-) False G26408
TU39180 other upstream 133271 5850404 ~ 5853366 (-) True G26414