RNA id: unassigned_transcript_308



Basic Information


Item Value
RNA id unassigned_transcript_308
length 83
RNA type tRNA
GC content 0.61
exon number 1
gene id trnal-aag_1
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20062475 ~ 20062557 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GTCaggatggccgagcggtctaaggcgctgcgttaaggtcgcagtctcctctggaggcgtgggttcgaatcccacttctgaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU44310 lncRNA downstream 52763 20000988 ~ 20009712 (-) True LOC122343146
TU44247 lncRNA downstream 81752 19980489 ~ 19980723 (-) True G29853
TU44245 lncRNA downstream 82116 19979957 ~ 19980359 (-) True G29851
TU44240 lncRNA downstream 86334 19975231 ~ 19976141 (-) True G29847
TU44243 lncRNA downstream 89028 19944294 ~ 19973447 (-) True G29849
TU44330 lncRNA upstream 80146 20142703 ~ 20144343 (-) False LOC122343174
XR_006250694.1 lncRNA upstream 80153 20142710 ~ 20144488 (-) True LOC122343174
TU44299 lncRNA upstream 83150 20145707 ~ 20146537 (-) True G29889
TU44303 lncRNA upstream 84057 20146614 ~ 20147299 (-) False G29889
TU44331 lncRNA upstream 90337 20152894 ~ 20153445 (-) True G29900
XM_043237503.1 mRNA downstream 58922 20001093 ~ 20003553 (-) False LOC122343146
XM_043237466.1 mRNA downstream 67879 19990684 ~ 19994596 (-) True LOC122343115
XM_043237364.1 mRNA downstream 72387 19981179 ~ 19990088 (-) False LOC122343058
XM_043236063.1 mRNA upstream 82498 20145055 ~ 20145645 (-) True LOC122342264
XM_043237446.1 mRNA upstream 85378 20147935 ~ 20150658 (-) False LOC122343109
XM_043237445.1 mRNA upstream 85378 20147935 ~ 20150658 (-) True LOC122343109
XM_043237490.1 mRNA upstream 94598 20157155 ~ 20160273 (-) True LOC122343134
XM_043237465.1 mRNA upstream 102152 20164709 ~ 20166414 (-) True LOC122343114
unassigned_transcript_307 other downstream 1043 20061352 ~ 20061432 (-) True trnal-cag
unassigned_transcript_306 other downstream 1804 20060589 ~ 20060671 (-) True trnal-aag
TU44159 other downstream 1130600 18931536 ~ 18931875 (-) True G29787
XR_006250672.1 other downstream 1144942 18916326 ~ 18917533 (-) True LOC122343130
TU44133 other downstream 1159927 18900565 ~ 18902548 (-) False LOC122343082
unassigned_transcript_310 other upstream 699 20063256 ~ 20063338 (-) True trnal-cag_1
unassigned_transcript_311 other upstream 1828 20064385 ~ 20064467 (-) True trnal-aag_2
unassigned_transcript_313 other upstream 2608 20065165 ~ 20065247 (-) True trnal-cag_2
unassigned_transcript_314 other upstream 3734 20066291 ~ 20066373 (-) True trnal-aag_3
unassigned_transcript_316 other upstream 4513 20067070 ~ 20067151 (-) True trnal-cag_3