RNA id: unassigned_transcript_311



Basic Information


Item Value
RNA id unassigned_transcript_311
length 83
RNA type tRNA
GC content 0.61
exon number 1
gene id trnal-aag_2
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20064385 ~ 20064467 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GTCaggatggccgagcggtctaaggcgctgcgttaaggtcgcagtctcctctggaggcgtgggttcgaatcccacttctgaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU44310 lncRNA downstream 54673 20000988 ~ 20009712 (-) True LOC122343146
TU44247 lncRNA downstream 83662 19980489 ~ 19980723 (-) True G29853
TU44245 lncRNA downstream 84026 19979957 ~ 19980359 (-) True G29851
TU44240 lncRNA downstream 88244 19975231 ~ 19976141 (-) True G29847
TU44243 lncRNA downstream 90938 19944294 ~ 19973447 (-) True G29849
TU44330 lncRNA upstream 78236 20142703 ~ 20144343 (-) False LOC122343174
XR_006250694.1 lncRNA upstream 78243 20142710 ~ 20144488 (-) True LOC122343174
TU44299 lncRNA upstream 81240 20145707 ~ 20146537 (-) True G29889
TU44303 lncRNA upstream 82147 20146614 ~ 20147299 (-) False G29889
TU44331 lncRNA upstream 88427 20152894 ~ 20153445 (-) True G29900
XM_043237503.1 mRNA downstream 60832 20001093 ~ 20003553 (-) False LOC122343146
XM_043237466.1 mRNA downstream 69789 19990684 ~ 19994596 (-) True LOC122343115
XM_043237364.1 mRNA downstream 74297 19981179 ~ 19990088 (-) False LOC122343058
XM_043236063.1 mRNA upstream 80588 20145055 ~ 20145645 (-) True LOC122342264
XM_043237446.1 mRNA upstream 83468 20147935 ~ 20150658 (-) False LOC122343109
XM_043237445.1 mRNA upstream 83468 20147935 ~ 20150658 (-) True LOC122343109
XM_043237490.1 mRNA upstream 92688 20157155 ~ 20160273 (-) True LOC122343134
XM_043237465.1 mRNA upstream 100242 20164709 ~ 20166414 (-) True LOC122343114
unassigned_transcript_310 other downstream 1047 20063256 ~ 20063338 (-) True trnal-cag_1
unassigned_transcript_308 other downstream 1828 20062475 ~ 20062557 (-) True trnal-aag_1
unassigned_transcript_307 other downstream 2953 20061352 ~ 20061432 (-) True trnal-cag
unassigned_transcript_306 other downstream 3714 20060589 ~ 20060671 (-) True trnal-aag
TU44159 other downstream 1132510 18931536 ~ 18931875 (-) True G29787
unassigned_transcript_313 other upstream 698 20065165 ~ 20065247 (-) True trnal-cag_2
unassigned_transcript_314 other upstream 1824 20066291 ~ 20066373 (-) True trnal-aag_3
unassigned_transcript_316 other upstream 2603 20067070 ~ 20067151 (-) True trnal-cag_3
unassigned_transcript_317 other upstream 3728 20068195 ~ 20068277 (-) True trnal-aag_4
unassigned_transcript_319 other upstream 4507 20068974 ~ 20069056 (-) True trnal-cag_4