RNA id: unassigned_transcript_320



Basic Information


Item Value
RNA id unassigned_transcript_320
length 83
RNA type tRNA
GC content 0.53
exon number 1
gene id trnal-aag_5
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20070096 ~ 20070178 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GTCaggatggccgagcggtctaaggcgctgcgttaaggtcgcagtctcctctggaggcgtgggttcgaatcccacttctgaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU44310 lncRNA downstream 60384 20000988 ~ 20009712 (-) True LOC122343146
TU44247 lncRNA downstream 89373 19980489 ~ 19980723 (-) True G29853
TU44245 lncRNA downstream 89737 19979957 ~ 19980359 (-) True G29851
TU44240 lncRNA downstream 93955 19975231 ~ 19976141 (-) True G29847
TU44243 lncRNA downstream 96649 19944294 ~ 19973447 (-) True G29849
TU44330 lncRNA upstream 72525 20142703 ~ 20144343 (-) False LOC122343174
XR_006250694.1 lncRNA upstream 72532 20142710 ~ 20144488 (-) True LOC122343174
TU44299 lncRNA upstream 75529 20145707 ~ 20146537 (-) True G29889
TU44303 lncRNA upstream 76436 20146614 ~ 20147299 (-) False G29889
TU44331 lncRNA upstream 82716 20152894 ~ 20153445 (-) True G29900
XM_043237503.1 mRNA downstream 66543 20001093 ~ 20003553 (-) False LOC122343146
XM_043237466.1 mRNA downstream 75500 19990684 ~ 19994596 (-) True LOC122343115
XM_043237364.1 mRNA downstream 80008 19981179 ~ 19990088 (-) False LOC122343058
XM_043236063.1 mRNA upstream 74877 20145055 ~ 20145645 (-) True LOC122342264
XM_043237446.1 mRNA upstream 77757 20147935 ~ 20150658 (-) False LOC122343109
XM_043237445.1 mRNA upstream 77757 20147935 ~ 20150658 (-) True LOC122343109
XM_043237490.1 mRNA upstream 86977 20157155 ~ 20160273 (-) True LOC122343134
XM_043237465.1 mRNA upstream 94531 20164709 ~ 20166414 (-) True LOC122343114
unassigned_transcript_319 other downstream 1040 20068974 ~ 20069056 (-) True trnal-cag_4
unassigned_transcript_317 other downstream 1819 20068195 ~ 20068277 (-) True trnal-aag_4
unassigned_transcript_316 other downstream 2945 20067070 ~ 20067151 (-) True trnal-cag_3
unassigned_transcript_314 other downstream 3723 20066291 ~ 20066373 (-) True trnal-aag_3
unassigned_transcript_313 other downstream 4849 20065165 ~ 20065247 (-) True trnal-cag_2
unassigned_transcript_322 other upstream 696 20070874 ~ 20070956 (-) True trnal-cag_5
unassigned_transcript_323 other upstream 1826 20072004 ~ 20072086 (-) True trnal-aag_6
unassigned_transcript_325 other upstream 2608 20072786 ~ 20072868 (-) True trnal-cag_6
unassigned_transcript_326 other upstream 3735 20073913 ~ 20073995 (-) True trnal-aag_7
unassigned_transcript_328 other upstream 4510 20074688 ~ 20074770 (-) True trnal-cag_7