RNA id: unassigned_transcript_332


Basic Information

Item Value
RNA id unassigned_transcript_332
length 76
RNA type tRNA
GC content 0.61
exon number 1
gene id trnam-cau_9
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20077742 ~ 20077817 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCTCGCTGGCGCAGTTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGCCTCACACGGGCAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44250 lncRNA upstream 94848 19981924 ~ 19982894 (+) True G29854
TU44246 lncRNA upstream 97019 19980489 ~ 19980723 (+) True G29852
TU44244 lncRNA upstream 99116 19978320 ~ 19978626 (+) True G29850
TU44237 lncRNA upstream 206827 19870420 ~ 19870915 (+) True G29844
TU44224 lncRNA upstream 291614 19731262 ~ 19786128 (+) True G29835
XR_006250696.1 lncRNA downstream 110167 20187984 ~ 20189971 (+) True LOC122343176
TU44291 lncRNA downstream 189019 20266836 ~ 20270112 (+) True G29883
TU44354 lncRNA downstream 245863 20323680 ~ 20442006 (+) True G29918
TU44355 lncRNA downstream 266547 20344364 ~ 20345054 (+) True LOC122342270
XR_006250693.1 lncRNA downstream 359848 20437665 ~ 20438508 (+) True LOC122343173
XM_043236062.1 mRNA upstream 31743 20043755 ~ 20045999 (+) True LOC122342262
XM_043237373.1 mRNA upstream 34289 20037933 ~ 20043453 (+) True LOC122343063
XM_043237387.1 mRNA upstream 327668 19745734 ~ 19750074 (+) True LOC122343071
XM_043237388.1 mRNA upstream 327668 19745734 ~ 19750074 (+) False LOC122343071
XM_043236059.1 mRNA upstream 371415 19703899 ~ 19706327 (+) True LOC122342253
XM_043236064.1 mRNA downstream 105836 20183653 ~ 20184498 (+) True LOC122342265
XM_043236067.1 mRNA downstream 266529 20344346 ~ 20346724 (+) False LOC122342270
XM_043237303.1 mRNA downstream 298593 20376410 ~ 20378106 (+) True LOC122343026
XM_043237447.1 mRNA downstream 313648 20391465 ~ 20392374 (+) True LOC122343110
XM_043236068.1 mRNA downstream 365529 20443346 ~ 20446136 (+) True LOC122342274
unassigned_transcript_330 other upstream 1672 20075993 ~ 20076070 (+) True trnae-cuc_7
unassigned_transcript_327 other upstream 3577 20074090 ~ 20074165 (+) True trnam-cau_8
unassigned_transcript_324 other upstream 5482 20072185 ~ 20072260 (+) True trnam-cau_7
unassigned_transcript_321 other upstream 7394 20070273 ~ 20070348 (+) True trnam-cau_6
unassigned_transcript_318 other upstream 9294 20068373 ~ 20068448 (+) True trnam-cau_5
unassigned_transcript_335 other downstream 1810 20079627 ~ 20079700 (+) True trnam-cau_10
unassigned_transcript_338 other downstream 3687 20081504 ~ 20081577 (+) True trnam-cau_11
unassigned_transcript_341 other downstream 5596 20083413 ~ 20083488 (+) True trnam-cau_12
unassigned_transcript_344 other downstream 7499 20085316 ~ 20085391 (+) True trnam-cau_13
unassigned_transcript_347 other downstream 9406 20087223 ~ 20087298 (+) True trnam-cau_14