RNA id: unassigned_transcript_335


Basic Information

Item Value
RNA id unassigned_transcript_335
length 74
RNA type tRNA
GC content 0.59
exon number 1
gene id trnam-cau_10
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20079627 ~ 20079700 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCTCGTTGGCGCAGTTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGCCTCACACGGGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44250 lncRNA upstream 96733 19981924 ~ 19982894 (+) True G29854
TU44246 lncRNA upstream 98904 19980489 ~ 19980723 (+) True G29852
TU44244 lncRNA upstream 101001 19978320 ~ 19978626 (+) True G29850
TU44237 lncRNA upstream 208712 19870420 ~ 19870915 (+) True G29844
TU44224 lncRNA upstream 293499 19731262 ~ 19786128 (+) True G29835
XR_006250696.1 lncRNA downstream 108284 20187984 ~ 20189971 (+) True LOC122343176
TU44291 lncRNA downstream 187136 20266836 ~ 20270112 (+) True G29883
TU44354 lncRNA downstream 243980 20323680 ~ 20442006 (+) True G29918
TU44355 lncRNA downstream 264664 20344364 ~ 20345054 (+) True LOC122342270
XR_006250693.1 lncRNA downstream 357965 20437665 ~ 20438508 (+) True LOC122343173
XM_043236062.1 mRNA upstream 33628 20043755 ~ 20045999 (+) True LOC122342262
XM_043237373.1 mRNA upstream 36174 20037933 ~ 20043453 (+) True LOC122343063
XM_043237387.1 mRNA upstream 329553 19745734 ~ 19750074 (+) True LOC122343071
XM_043237388.1 mRNA upstream 329553 19745734 ~ 19750074 (+) False LOC122343071
XM_043236059.1 mRNA upstream 373300 19703899 ~ 19706327 (+) True LOC122342253
XM_043236064.1 mRNA downstream 103953 20183653 ~ 20184498 (+) True LOC122342265
XM_043236067.1 mRNA downstream 264646 20344346 ~ 20346724 (+) False LOC122342270
XM_043237303.1 mRNA downstream 296710 20376410 ~ 20378106 (+) True LOC122343026
XM_043237447.1 mRNA downstream 311765 20391465 ~ 20392374 (+) True LOC122343110
XM_043236068.1 mRNA downstream 363646 20443346 ~ 20446136 (+) True LOC122342274
unassigned_transcript_332 other upstream 1810 20077742 ~ 20077817 (+) True trnam-cau_9
unassigned_transcript_330 other upstream 3557 20075993 ~ 20076070 (+) True trnae-cuc_7
unassigned_transcript_327 other upstream 5462 20074090 ~ 20074165 (+) True trnam-cau_8
unassigned_transcript_324 other upstream 7367 20072185 ~ 20072260 (+) True trnam-cau_7
unassigned_transcript_321 other upstream 9279 20070273 ~ 20070348 (+) True trnam-cau_6
unassigned_transcript_338 other downstream 1804 20081504 ~ 20081577 (+) True trnam-cau_11
unassigned_transcript_341 other downstream 3713 20083413 ~ 20083488 (+) True trnam-cau_12
unassigned_transcript_344 other downstream 5616 20085316 ~ 20085391 (+) True trnam-cau_13
unassigned_transcript_347 other downstream 7523 20087223 ~ 20087298 (+) True trnam-cau_14
unassigned_transcript_350 other downstream 9432 20089132 ~ 20089205 (+) True trnam-cau_15